View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_29 (Length: 281)
Name: NF12850_low_29
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 43925673 - 43925924
Alignment:
| Q |
16 |
tcacaactacaatgtactccataatatcaattgcatcgtccaccctgaaatagaatatcatagtacatgaacaaaataactttcacataatcatttctta |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43925673 |
tcacaactacaatgtactctataatatcaattgcatcgtccaccctgaaatagaatatcatagtacatgaacaaaataactttcacataatcatttctta |
43925772 |
T |
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| Q |
116 |
tttggtcatatctaacctaaaagtctcaaaaaccatgaagcaagaaactacataccataccatatagcgtgggttggtttattcaaataatagacattat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43925773 |
tttggtcatatctaacctaaaagtctcaaaaaccatgaagcaagaaactacataccataccatatagcgtgggttggtttattcaaataatagacattat |
43925872 |
T |
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| Q |
216 |
actaattttcaacattagtggtcctacttgattattagatctagtcaaatat |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43925873 |
actaattttcaacattagtggtcctacttgattattagatctagtcaaatat |
43925924 |
T |
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