View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_30 (Length: 274)
Name: NF12850_low_30
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_30 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 33005432 - 33005162
Alignment:
| Q |
4 |
ggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctg |
103 |
Q |
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| T |
33005432 |
ggagaatcaaagaccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagatcaatgaactagctttagggttagagctg |
33005333 |
T |
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| Q |
104 |
agtggtcaaaaattcttgtgggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaatgaccctttaaaatacttaccaagtg |
203 |
Q |
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| T |
33005332 |
agtggtcaaaaattcttgtgggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaatgaccctttaaaatacttaccaagtg |
33005233 |
T |
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| Q |
204 |
ggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccacagactcaaatcctaagc |
274 |
Q |
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| T |
33005232 |
ggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccacagactcaaatcctaagc |
33005162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 24 - 274
Target Start/End: Complemental strand, 3778176 - 3777917
Alignment:
| Q |
24 |
ctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaattcttgtg |
123 |
Q |
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||||||||||||| |||||||||||| | | | |||||||||| ||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
3778176 |
ctgttttgtatgtctcctttggaagtgcatgcactttatctcaacagcagatcaatgaactagcattagggttagaggtgagtggtcagaaattcttgtg |
3778077 |
T |
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| Q |
124 |
ggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaat---------gaccctttaaaatacttaccaagtgggttcttaggg |
214 |
Q |
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| T |
3778076 |
ggttttgagagaacctagtaattctattaatgtaggaaaccatagtgctaccaatgatcatgacgacccattaaagtttttaccacaagggttcttagag |
3777977 |
T |
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| Q |
215 |
agaaccaaagaacaaggattagtagtttctttttgggcaccacagactcaaatcctaagc |
274 |
Q |
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| T |
3777976 |
agaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagc |
3777917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 3700893 - 3701037
Alignment:
| Q |
4 |
ggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctg |
103 |
Q |
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|||||| |||| ||||| || ||||||||||| | |||||||||| |||||| |||||||||| | || || |||||||||||||| ||||| ||| || |
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| T |
3700893 |
ggagaatcaaacaccaaactcagttttgtatgtctgctttggaagtggaggaactttatctcaacaacaaatcaatgaactagctttggggttggagttg |
3700992 |
T |
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| Q |
104 |
agtggtcaaaaattcttgtgggttttgagagaacctaataattct |
148 |
Q |
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| T |
3700993 |
agtaatcagaaattcttgtgggttttgagagaacctagtaattct |
3701037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 3707660 - 3707796
Alignment:
| Q |
4 |
ggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctg |
103 |
Q |
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|||||| |||| ||||| || ||||||||||||| |||||||||| |||||| |||||||||| | || | |||||||||||||| ||| | || || |
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| T |
3707660 |
ggagaatcaaacaccaaactcagttttgtatgtgtgctttggaagtggaggaactttatctcaacaacaaaccaatgaactagctttggggctggaattg |
3707759 |
T |
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| Q |
104 |
agtggtcaaaaattcttgtgggttttgagagaaccta |
140 |
Q |
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| T |
3707760 |
agtggtcagaaattcttgtgggttttgagagaaccta |
3707796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 3770535 - 3770399
Alignment:
| Q |
4 |
ggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctg |
103 |
Q |
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|||||| |||| ||||| || ||||||||||| | |||||||||| |||||| ||| |||||| | || | |||||||||||||| ||| | ||| || |
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| T |
3770535 |
ggagaatcaaacaccaaactcagttttgtatgtctgctttggaagtggaggaactttttctcaacaacaaaccaatgaactagctttggggctggagttg |
3770436 |
T |
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| Q |
104 |
agtggtcaaaaattcttgtgggttttgagagaaccta |
140 |
Q |
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| T |
3770435 |
agtggtcagaaattcttgtgggttttgagagaaccta |
3770399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 3719169 - 3719303
Alignment:
| Q |
4 |
ggagaagcaaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctg |
103 |
Q |
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|||||| |||| ||||| || ||||||||||| | |||||||||| |||||| |||||||||| | ||||| |||||| ||||||| | ||| ||| || |
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| T |
3719169 |
ggagaatcaaacaccaaactcagttttgtatgtctgctttggaagtggaggaactttatctcaacaacagatcaatgaattagctttggcgttggagttg |
3719268 |
T |
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| Q |
104 |
agtggtcaaaaattcttgtgggttttgagagaacc |
138 |
Q |
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||| ||| ||||| |||||||||||||||||||| |
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| T |
3719269 |
agtaatcagaaatttttgtgggttttgagagaacc |
3719303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 3701080 - 3701162
Alignment:
| Q |
176 |
aatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccaca |
258 |
Q |
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| T |
3701080 |
aatgacctattaaagtacttaccacatgggttcttagagagaaccaaagaacaagggttagttgttcctctttgggcaccaca |
3701162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 3770348 - 3770251
Alignment:
| Q |
176 |
aatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccacagactcaaatcctaag |
273 |
Q |
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||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| ||| || ||||||||||||| || |||||||||| |
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| T |
3770348 |
aatgacctattaaagtacttaccacatgggttcttagaaagaaccaaagaacaagggttagttgttcctctttgggcaccacaaaccaaaatcctaag |
3770251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 3707856 - 3707944
Alignment:
| Q |
185 |
ttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccacagactcaaatcctaag |
273 |
Q |
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||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| ||| || ||||||||||||| || |||||||||| |
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| T |
3707856 |
ttaaagtacttaccacatgggttcttagatagaaccaaagaacaagggttagttgttcctctttgggcaccacaaaccaaaatcctaag |
3707944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 3719356 - 3719438
Alignment:
| Q |
176 |
aatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccaca |
258 |
Q |
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||||||| ||||| | ||||||| ||||||||||| |||||||||||||||||| |||| ||| | ||||||||||||| |
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| T |
3719356 |
aatgacctattaaagttcttaccacatgggttcttagagagaaccaaagaacaagggctagttgttccactttgggcaccaca |
3719438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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