View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12850_low_32 (Length: 242)

Name: NF12850_low_32
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12850_low_32
NF12850_low_32
[»] chr2 (26 HSPs)
chr2 (83-211)||(18373577-18373705)
chr2 (203-242)||(6648512-6648551)
chr2 (202-242)||(13197702-13197742)
chr2 (207-242)||(9047752-9047787)
chr2 (207-242)||(37666607-37666642)
chr2 (207-242)||(41478636-41478671)
chr2 (208-242)||(3055656-3055690)
chr2 (204-242)||(16243777-16243815)
chr2 (208-242)||(37990011-37990045)
chr2 (209-242)||(13344582-13344615)
chr2 (209-242)||(38917521-38917554)
chr2 (209-242)||(44398784-44398817)
chr2 (210-242)||(12337937-12337969)
chr2 (206-238)||(13775832-13775864)
chr2 (210-242)||(15372324-15372356)
chr2 (210-242)||(15896940-15896972)
chr2 (210-242)||(16044317-16044349)
chr2 (207-238)||(41492893-41492924)
chr2 (204-238)||(15372220-15372254)
chr2 (209-242)||(30099181-30099214)
chr2 (209-238)||(30852719-30852748)
chr2 (201-238)||(41478741-41478778)
chr2 (209-238)||(42263468-42263497)
chr2 (209-242)||(44397645-44397678)
chr2 (213-242)||(44804581-44804610)
chr2 (202-238)||(33274091-33274127)
[»] chr4 (24 HSPs)
chr4 (202-242)||(47838609-47838649)
chr4 (205-242)||(3422158-3422195)
chr4 (198-242)||(48336361-48336405)
chr4 (207-242)||(41469763-41469798)
chr4 (204-242)||(51894576-51894614)
chr4 (209-242)||(3904682-3904715)
chr4 (209-242)||(53337468-53337501)
chr4 (210-242)||(6121893-6121925)
chr4 (210-242)||(20538686-20538718)
chr4 (210-242)||(42797830-42797862)
chr4 (210-242)||(46797823-46797855)
chr4 (210-242)||(47833709-47833741)
chr4 (207-242)||(5986974-5987009)
chr4 (207-242)||(33621894-33621929)
chr4 (203-238)||(47833604-47833639)
chr4 (208-238)||(43900547-43900577)
chr4 (205-235)||(48361046-48361076)
chr4 (209-242)||(3993074-3993107)
chr4 (209-242)||(24704468-24704501)
chr4 (209-238)||(40913291-40913320)
chr4 (210-242)||(3372219-3372251)
chr4 (210-238)||(4780397-4780425)
chr4 (210-242)||(43900647-43900679)
chr4 (206-238)||(48336259-48336291)
[»] chr7 (23 HSPs)
chr7 (203-242)||(7240847-7240886)
chr7 (203-242)||(7482323-7482362)
chr7 (207-242)||(1738444-1738479)
chr7 (204-242)||(28536745-28536783)
chr7 (209-242)||(9268854-9268887)
chr7 (154-210)||(5968351-5968407)
chr7 (206-238)||(22285695-22285727)
chr7 (210-242)||(22285797-22285829)
chr7 (210-242)||(23314139-23314171)
chr7 (210-242)||(46840958-46840990)
chr7 (207-242)||(36583493-36583528)
chr7 (207-242)||(38063910-38063945)
chr7 (204-238)||(3411453-3411487)
chr7 (205-238)||(1738549-1738582)
chr7 (209-242)||(4790346-4790379)
chr7 (209-238)||(5347721-5347750)
chr7 (210-242)||(94318-94350)
chr7 (206-238)||(7240745-7240777)
chr7 (202-238)||(7463571-7463607)
chr7 (202-238)||(7482217-7482253)
chr7 (210-242)||(31319399-31319431)
chr7 (210-238)||(36016298-36016326)
chr7 (210-242)||(38441558-38441590)
[»] chr5 (26 HSPs)
chr5 (204-242)||(9395448-9395486)
chr5 (204-242)||(13103122-13103160)
chr5 (204-242)||(13033149-13033187)
chr5 (204-242)||(36563532-36563570)
chr5 (208-242)||(41989405-41989439)
chr5 (209-242)||(17025722-17025755)
chr5 (209-242)||(21576044-21576077)
chr5 (209-242)||(37642052-37642085)
chr5 (202-238)||(582981-583017)
chr5 (210-242)||(6126922-6126954)
chr5 (210-242)||(20848171-20848203)
chr5 (207-237)||(1643466-1643496)
chr5 (208-242)||(26350348-26350382)
chr5 (204-238)||(37149057-37149091)
chr5 (204-238)||(37641947-37641981)
chr5 (210-240)||(38361713-38361743)
chr5 (202-235)||(1015279-1015312)
chr5 (205-238)||(7053768-7053801)
chr5 (209-242)||(11795266-11795299)
chr5 (206-235)||(13789727-13789756)
chr5 (202-238)||(9395342-9395378)
chr5 (205-237)||(13145002-13145034)
chr5 (210-242)||(23360040-23360072)
chr5 (201-237)||(29374292-29374328)
chr5 (206-238)||(36417042-36417074)
chr5 (210-242)||(37148955-37148987)
[»] scaffold0204 (2 HSPs)
scaffold0204 (198-242)||(23883-23927)
scaffold0204 (206-238)||(23781-23813)
[»] chr8 (25 HSPs)
chr8 (206-242)||(44498183-44498219)
chr8 (207-242)||(7785775-7785810)
chr8 (207-242)||(7805696-7805731)
chr8 (208-242)||(32211361-32211395)
chr8 (208-242)||(39571201-39571235)
chr8 (209-242)||(54611-54644)
chr8 (209-242)||(2890161-2890194)
chr8 (209-242)||(25600999-25601032)
chr8 (209-242)||(43199353-43199386)
chr8 (210-242)||(6552753-6552785)
chr8 (203-235)||(33057587-33057619)
chr8 (210-242)||(33289261-33289293)
chr8 (204-238)||(54714-54748)
chr8 (208-242)||(7012269-7012303)
chr8 (204-238)||(8587164-8587198)
chr8 (208-242)||(12763652-12763686)
chr8 (204-238)||(27422292-27422326)
chr8 (208-242)||(32114473-32114507)
chr8 (202-235)||(1223114-1223147)
chr8 (202-235)||(6899411-6899444)
chr8 (196-237)||(41915579-41915620)
chr8 (210-242)||(3304278-3304310)
chr8 (203-235)||(8793843-8793875)
chr8 (210-238)||(31654613-31654641)
chr8 (206-238)||(34028504-34028536)
[»] chr6 (21 HSPs)
chr6 (202-242)||(8099628-8099668)
chr6 (207-242)||(26602421-26602456)
chr6 (208-242)||(9644794-9644828)
chr6 (208-242)||(9650811-9650845)
chr6 (209-242)||(6068664-6068697)
chr6 (209-242)||(6330213-6330246)
chr6 (209-242)||(11572144-11572177)
chr6 (209-242)||(13853592-13853625)
chr6 (210-242)||(2830433-2830465)
chr6 (210-242)||(8382969-8383001)
chr6 (200-238)||(13853695-13853733)
chr6 (204-238)||(24949624-24949658)
chr6 (208-242)||(33052792-33052826)
chr6 (209-242)||(22896560-22896593)
chr6 (209-242)||(35031000-35031033)
chr6 (210-242)||(8417793-8417825)
chr6 (202-238)||(9644688-9644724)
chr6 (202-238)||(9650705-9650741)
chr6 (210-242)||(17992086-17992118)
chr6 (210-238)||(22896471-22896499)
chr6 (202-238)||(31971021-31971057)
[»] chr3 (34 HSPs)
chr3 (127-211)||(49394500-49394584)
chr3 (203-242)||(6013329-6013368)
chr3 (208-242)||(10298077-10298111)
chr3 (208-242)||(40690994-40691028)
chr3 (209-242)||(8437523-8437556)
chr3 (205-242)||(8817381-8817418)
chr3 (209-242)||(46208128-46208161)
chr3 (209-242)||(49823380-49823413)
chr3 (209-242)||(51406771-51406804)
chr3 (210-242)||(2787832-2787864)
chr3 (198-238)||(4238582-4238622)
chr3 (210-242)||(19557052-19557084)
chr3 (210-242)||(21295326-21295358)
chr3 (210-242)||(34080030-34080062)
chr3 (202-238)||(38964384-38964420)
chr3 (210-242)||(38964490-38964522)
chr3 (210-242)||(48340495-48340527)
chr3 (208-242)||(17653810-17653844)
chr3 (209-242)||(4238692-4238725)
chr3 (202-235)||(8266355-8266388)
chr3 (213-242)||(9111497-9111526)
chr3 (209-242)||(22722029-22722062)
chr3 (209-242)||(37509019-37509052)
chr3 (213-242)||(42507358-42507387)
chr3 (209-238)||(46208029-46208058)
chr3 (210-238)||(17653712-17653740)
chr3 (207-235)||(21662882-21662910)
chr3 (206-238)||(22721927-22721959)
chr3 (202-238)||(26123111-26123147)
chr3 (210-238)||(37508921-37508949)
chr3 (209-237)||(40215022-40215050)
chr3 (203-235)||(40464646-40464678)
chr3 (206-238)||(51698109-51698141)
chr3 (207-235)||(53441903-53441931)
[»] scaffold0482 (1 HSPs)
scaffold0482 (207-242)||(12958-12993)
[»] scaffold0464 (1 HSPs)
scaffold0464 (203-242)||(6124-6163)
[»] chr1 (25 HSPs)
chr1 (203-242)||(9981745-9981784)
chr1 (207-242)||(12483625-12483660)
chr1 (207-242)||(14984935-14984970)
chr1 (208-242)||(1050986-1051020)
chr1 (200-242)||(47969793-47969835)
chr1 (209-242)||(25694417-25694450)
chr1 (210-242)||(11796031-11796063)
chr1 (210-242)||(26471065-26471097)
chr1 (210-242)||(27159358-27159390)
chr1 (210-242)||(31842795-31842827)
chr1 (210-242)||(39401966-39401998)
chr1 (210-242)||(44668093-44668125)
chr1 (210-242)||(47777481-47777513)
chr1 (204-238)||(11897048-11897082)
chr1 (208-238)||(11897156-11897186)
chr1 (208-242)||(34042794-34042828)
chr1 (209-238)||(16448210-16448239)
chr1 (209-238)||(17556855-17556884)
chr1 (204-237)||(34718884-34718917)
chr1 (209-242)||(47216698-47216731)
chr1 (207-235)||(26760297-26760325)
chr1 (207-235)||(26924209-26924237)
chr1 (207-235)||(26924337-26924365)
chr1 (206-238)||(27159460-27159492)
chr1 (206-238)||(44668195-44668227)
[»] scaffold0009 (1 HSPs)
scaffold0009 (210-242)||(49603-49635)
[»] scaffold0007 (2 HSPs)
scaffold0007 (207-237)||(77466-77496)
scaffold0007 (210-238)||(77344-77372)
[»] scaffold0002 (1 HSPs)
scaffold0002 (209-238)||(492303-492332)
[»] scaffold0110 (1 HSPs)
scaffold0110 (203-235)||(1656-1688)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 18373577 - 18373705
Alignment:
Q  83 gtgtctatgtaagagtttatcattcacaaactctctattcttaagaacaactcttgcaaatgcacaacctcaaataaaatttatttagacatacacacat 182  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  18373577 gtgtctatgtaagagtttatcattctcaaactctctattctcaagaacaactcttgcaaatgcacaacctcaaataaaatttatttagacatacgcacaa 18373676  T
Q  183 gaatgataaatttaaaaagaaaaataata 211  Q
    |||||||||||||||||||||||||||||    
T  18373677 gaatgataaatttaaaaagaaaaataata 18373705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 6648512 - 6648551
Alignment:
Q  203 aaaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6648512 aaaataatactccctccggtcctatttataagagaatttt 6648551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 13197702 - 13197742
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  13197702 aaaaatactactccctccggtcctatttataagagaatttt 13197742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 9047752 - 9047787
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  9047752 taatactccctccggtcctatttataagagaatttt 9047787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 37666607 - 37666642
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  37666607 taatactccctccggtcctatttataagagaatttt 37666642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 41478636 - 41478671
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  41478636 taatactccctccggtcctatttataagagaatttt 41478671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 3055690 - 3055656
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  3055690 aatactccctccggtcctatttataagagaatttt 3055656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 16243777 - 16243815
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  16243777 aaataatactccatccggtcctatttataagagaatttt 16243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 37990011 - 37990045
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  37990011 aatactccctccggtcctatttataagagaatttt 37990045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 13344615 - 13344582
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  13344615 atactccctccggtcctatttataagagaatttt 13344582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 38917521 - 38917554
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  38917521 atactccctccggtcctatttataagagaatttt 38917554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 44398817 - 44398784
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  44398817 atactccctccggtcctatttataagagaatttt 44398784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 12337937 - 12337969
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  12337937 tactccctccggtcctatttataagagaatttt 12337969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 13775864 - 13775832
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||||||    
T  13775864 ataatactccctccggtcctatttataagagaa 13775832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 15372356 - 15372324
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  15372356 tactccctccggtcctatttataagagaatttt 15372324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 15896972 - 15896940
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  15896972 tactccctccggtcctatttataagagaatttt 15896940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 16044317 - 16044349
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  16044317 tactccctccggtcctatttataagagaatttt 16044349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 41492893 - 41492924
Alignment:
Q  207 taatactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||||||||    
T  41492893 taatactccctccggtcctatttataagagaa 41492924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 15372220 - 15372254
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||| ||||||||||||||||||    
T  15372220 aaataatactccctccagtcctatttataagagaa 15372254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 30099181 - 30099214
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||| ||||||||||    
T  30099181 atactccctccggtcctatttattagagaatttt 30099214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 30852748 - 30852719
Alignment:
Q  209 atactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||||||    
T  30852748 atactccctccggtcctatttataagagaa 30852719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 41478778 - 41478741
Alignment:
Q  201 gaaaaataatactccctccggtcctatttataagagaa 238  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  41478778 gaaaaaaaatactacctccggtcctatttataagagaa 41478741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 42263468 - 42263497
Alignment:
Q  209 atactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||||||    
T  42263468 atactccctccggtcctatttataagagaa 42263497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 44397678 - 44397645
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    |||||||| |||||||||||||||||||||||||    
T  44397678 atactccccccggtcctatttataagagaatttt 44397645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 44804581 - 44804610
Alignment:
Q  213 tccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||    
T  44804581 tccctccggtcctatttataagagaatttt 44804610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 33274127 - 33274091
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  33274127 aaaaataatactccctccggtccaatttataaaagaa 33274091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 47838609 - 47838649
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47838609 aaaaataatactccctccggtcctatttataagagaatttt 47838649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 3422195 - 3422158
Alignment:
Q  205 aataatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3422195 aataatactccctccggtcctatttataagagaatttt 3422158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 48336405 - 48336361
Alignment:
Q  198 aaagaaaaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  48336405 aaagataaataatactccctccggtcctatttataagaaaatttt 48336361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 41469763 - 41469798
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  41469763 taatactccctccggtcctatttataagagaatttt 41469798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 51894576 - 51894614
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  51894576 aaatattactccctccggtcctatttataagagaatttt 51894614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 3904682 - 3904715
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  3904682 atactccctccggtcctatttataagagaatttt 3904715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 53337501 - 53337468
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  53337501 atactccctccggtcctatttataagagaatttt 53337468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 6121893 - 6121925
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  6121893 tactccctccggtcctatttataagagaatttt 6121925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 20538686 - 20538718
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  20538686 tactccctccggtcctatttataagagaatttt 20538718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 42797862 - 42797830
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  42797862 tactccctccggtcctatttataagagaatttt 42797830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 46797855 - 46797823
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  46797855 tactccctccggtcctatttataagagaatttt 46797823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 47833741 - 47833709
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  47833741 tactccctccggtcctatttataagagaatttt 47833709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 5987009 - 5986974
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    |||||||| |||||||||||||||||||||||||||    
T  5987009 taatactctctccggtcctatttataagagaatttt 5986974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 33621929 - 33621894
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33621929 taatactccctccggtcctatttataagataatttt 33621894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 47833604 - 47833639
Alignment:
Q  203 aaaataatactccctccggtcctatttataagagaa 238  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47833604 aaaataatactacctccggtcctatttataagagaa 47833639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 43900547 - 43900577
Alignment:
Q  208 aatactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||||    
T  43900547 aatactccctccggtcctatttataagagaa 43900577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Original strand, 48361046 - 48361076
Alignment:
Q  205 aataatactccctccggtcctatttataaga 235  Q
    |||||||||||||||||||||||||||||||    
T  48361046 aataatactccctccggtcctatttataaga 48361076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 3993107 - 3993074
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||| ||||||||||||||||||    
T  3993107 atactccctccggtcttatttataagagaatttt 3993074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 24704501 - 24704468
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||| |||||||||||||||||||||    
T  24704501 atactccctccgatcctatttataagagaatttt 24704468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 40913320 - 40913291
Alignment:
Q  209 atactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||||||    
T  40913320 atactccctccggtcctatttataagagaa 40913291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 3372251 - 3372219
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||| ||||||    
T  3372251 tactccctccggtcctatttataagataatttt 3372219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 4780425 - 4780397
Alignment:
Q  210 tactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||    
T  4780425 tactccctccggtcctatttataagagaa 4780397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 43900679 - 43900647
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||| ||||||||||||||||||||||||||||    
T  43900679 tacttcctccggtcctatttataagagaatttt 43900647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 48336259 - 48336291
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    |||||||| ||||||||||||||||||||||||    
T  48336259 ataatactacctccggtcctatttataagagaa 48336291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 7240886 - 7240847
Alignment:
Q  203 aaaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7240886 aaaataatactccctccggtcctatttataagagaatttt 7240847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 7482362 - 7482323
Alignment:
Q  203 aaaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7482362 aaaataatactccctccggtcctatttataagagaatttt 7482323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 1738444 - 1738479
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  1738444 taatactccctccggtcctatttataagagaatttt 1738479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 28536745 - 28536783
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaatttt 242  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  28536745 aaatgatactccctccggtcctatttataagagaatttt 28536783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 9268887 - 9268854
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  9268887 atactccctccggtcctatttataagagaatttt 9268854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 5968351 - 5968407
Alignment:
Q  154 aaataaaatttatttagacatacacacatgaatgataaatttaaaaagaaaaataat 210  Q
    ||||||||||||||| |||| ||| |||||||||||||| || |||||| |||||||    
T  5968351 aaataaaatttatttggacacacatacatgaatgataaaatttaaaagagaaataat 5968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 22285695 - 22285727
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||||||    
T  22285695 ataatactccctccggtcctatttataagagaa 22285727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 22285829 - 22285797
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  22285829 tactccctccggtcctatttataagagaatttt 22285797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 23314139 - 23314171
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  23314139 tactccctccggtcctatttataagagaatttt 23314171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 46840990 - 46840958
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  46840990 tactccctccggtcctatttataagagaatttt 46840958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 36583528 - 36583493
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||| |||||||||||||||||||||    
T  36583528 taatactccctccgatcctatttataagagaatttt 36583493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 38063910 - 38063945
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||| |||||||||||||||||||||||    
T  38063910 taatactccctctggtcctatttataagagaatttt 38063945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 3411487 - 3411453
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||| |||||||||||||||||    
T  3411487 aaataatactccctccgatcctatttataagagaa 3411453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 1738582 - 1738549
Alignment:
Q  205 aataatactccctccggtcctatttataagagaa 238  Q
    ||||||||| ||||||||||||||||||||||||    
T  1738582 aataatactacctccggtcctatttataagagaa 1738549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 4790379 - 4790346
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||| ||||||||||||||||||||||||||||    
T  4790379 atacttcctccggtcctatttataagagaatttt 4790346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 5347721 - 5347750
Alignment:
Q  209 atactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||||||    
T  5347721 atactccctccggtcctatttataagagaa 5347750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 94318 - 94350
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||| |||||||||||||||||||||    
T  94318 tactccctccgatcctatttataagagaatttt 94350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 7240745 - 7240777
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    |||||||| ||||||||||||||||||||||||    
T  7240745 ataatactacctccggtcctatttataagagaa 7240777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 7463607 - 7463571
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  7463607 aaaaatattactccctctggtcctatttataagagaa 7463571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 7482217 - 7482253
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  7482217 aaaaattatactacctccggtcctatttataagagaa 7482253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 31319399 - 31319431
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||| |||||||||||||||||||    
T  31319399 tactccctccggttctatttataagagaatttt 31319431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 36016326 - 36016298
Alignment:
Q  210 tactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||    
T  36016326 tactccctccggtcctatttataagagaa 36016298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 38441590 - 38441558
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||| ||||||||||||||||||||||||||||    
T  38441590 tacttcctccggtcctatttataagagaatttt 38441558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 9395486 - 9395448
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9395486 aaataatactccctccggtcctatttataagagaatttt 9395448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 13103160 - 13103122
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13103160 aaataatactccctccggtcctatttataagagaatttt 13103122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 13033187 - 13033149
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  13033187 aaataatactccctccgatcctatttataagagaatttt 13033149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 36563532 - 36563570
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaatttt 242  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  36563532 aaatcatactccctccggtcctatttataagagaatttt 36563570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 41989405 - 41989439
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  41989405 aatactccctccggtcctatttataagagaatttt 41989439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 17025755 - 17025722
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  17025755 atactccctccggtcctatttataagagaatttt 17025722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 21576077 - 21576044
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  21576077 atactccctccggtcctatttataagagaatttt 21576044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 37642085 - 37642052
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  37642085 atactccctccggtcctatttataagagaatttt 37642052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 582981 - 583017
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    |||||||||||| ||||||||||||||||||||||||    
T  582981 aaaaataatactacctccggtcctatttataagagaa 583017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 6126954 - 6126922
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  6126954 tactccctccggtcctatttataagagaatttt 6126922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 20848203 - 20848171
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  20848203 tactccctccggtcctatttataagagaatttt 20848171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 1643496 - 1643466
Alignment:
Q  207 taatactccctccggtcctatttataagaga 237  Q
    |||||||||||||||||||||||||||||||    
T  1643496 taatactccctccggtcctatttataagaga 1643466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 26350348 - 26350382
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||| ||||||||    
T  26350348 aatactccctccggtcctatttataaaagaatttt 26350382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 37149091 - 37149057
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaa 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  37149091 aaataatactacctccggtcctatttataagagaa 37149057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 37641947 - 37641981
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaa 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  37641947 aaataatactacctccggtcctatttataagagaa 37641981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Original strand, 38361713 - 38361743
Alignment:
Q  210 tactccctccggtcctatttataagagaatt 240  Q
    |||||||||||||||||||||||||||||||    
T  38361713 tactccctccggtcctatttataagagaatt 38361743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 1015312 - 1015279
Alignment:
Q  202 aaaaataatactccctccggtcctatttataaga 235  Q
    ||||||||||||||||||||| ||||||||||||    
T  1015312 aaaaataatactccctccggttctatttataaga 1015279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 7053801 - 7053768
Alignment:
Q  205 aataatactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||| |||||||    
T  7053801 aataatactccctccggtcctatttacaagagaa 7053768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 11795299 - 11795266
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||| ||||||||||||||||||||||    
T  11795299 atactccctccagtcctatttataagagaatttt 11795266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 13789727 - 13789756
Alignment:
Q  206 ataatactccctccggtcctatttataaga 235  Q
    ||||||||||||||||||||||||||||||    
T  13789727 ataatactccctccggtcctatttataaga 13789756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 9395342 - 9395378
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  9395342 aaaaatattactacctccggtcctatttataagagaa 9395378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 13145034 - 13145002
Alignment:
Q  205 aataatactccctccggtcctatttataagaga 237  Q
    |||||||||||||||||||||||||| ||||||    
T  13145034 aataatactccctccggtcctatttacaagaga 13145002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 23360072 - 23360040
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||| ||||||||||||||||||||||||||||    
T  23360072 tactacctccggtcctatttataagagaatttt 23360040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 29374328 - 29374292
Alignment:
Q  201 gaaaaataatactccctccggtcctatttataagaga 237  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  29374328 gaaaaaaaatactccctccggtcctatttacaagaga 29374292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 36417042 - 36417074
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||| |||||||    
T  36417042 ataatactccctccggtcctatttacaagagaa 36417074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 37148955 - 37148987
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||| ||||||||    
T  37148955 tactccctccggtcctatttataatagaatttt 37148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 23927 - 23883
Alignment:
Q  198 aaagaaaaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  23927 aaagataaataatactccctccggtcctatttataagaaaatttt 23883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 23781 - 23813
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    |||||||| ||||||||||||||||||||||||    
T  23781 ataatactacctccggtcctatttataagagaa 23813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 44498183 - 44498219
Alignment:
Q  206 ataatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  44498183 ataatactccctccggtcctatttataagagaatttt 44498219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 7785775 - 7785810
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  7785775 taatactccctccggtcctatttataagagaatttt 7785810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 7805696 - 7805731
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  7805696 taatactccctccggtcctatttataagagaatttt 7805731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 32211361 - 32211395
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  32211361 aatactccctccggtcctatttataagagaatttt 32211395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 39571201 - 39571235
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  39571201 aatactccctccggtcctatttataagagaatttt 39571235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 54611 - 54644
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  54611 atactccctccggtcctatttataagagaatttt 54644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 2890161 - 2890194
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  2890161 atactccctccggtcctatttataagagaatttt 2890194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 25600999 - 25601032
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  25600999 atactccctccggtcctatttataagagaatttt 25601032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 43199353 - 43199386
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  43199353 atactccctccggtcctatttataagagaatttt 43199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 6552785 - 6552753
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  6552785 tactccctccggtcctatttataagagaatttt 6552753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 33057587 - 33057619
Alignment:
Q  203 aaaataatactccctccggtcctatttataaga 235  Q
    |||||||||||||||||||||||||||||||||    
T  33057587 aaaataatactccctccggtcctatttataaga 33057619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 33289261 - 33289293
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  33289261 tactccctccggtcctatttataagagaatttt 33289293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 54748 - 54714
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaa 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  54748 aaataatactacctccggtcctatttataagagaa 54714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 7012303 - 7012269
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||| ||||||||||||||||||||||||||||    
T  7012303 aatacttcctccggtcctatttataagagaatttt 7012269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 8587164 - 8587198
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaa 238  Q
    ||||| |||||||||||||||||||||||||||||    
T  8587164 aaatagtactccctccggtcctatttataagagaa 8587198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 12763652 - 12763686
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||| ||||||    
T  12763652 aatactccctccggtcctatttataagataatttt 12763686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 27422326 - 27422292
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaa 238  Q
    |||||||||||||| ||||||||||||||||||||    
T  27422326 aaataatactcccttcggtcctatttataagagaa 27422292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 32114473 - 32114507
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||| ||||||    
T  32114473 aatactccctccggtcctatttataagaaaatttt 32114507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 1223114 - 1223147
Alignment:
Q  202 aaaaataatactccctccggtcctatttataaga 235  Q
    |||||||||||||||||||||| |||||||||||    
T  1223114 aaaaataatactccctccggtcatatttataaga 1223147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 6899411 - 6899444
Alignment:
Q  202 aaaaataatactccctccggtcctatttataaga 235  Q
    |||||||||||| |||||||||||||||||||||    
T  6899411 aaaaataatactacctccggtcctatttataaga 6899444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 41915579 - 41915620
Alignment:
Q  196 aaaaagaaaaataatactccctccggtcctatttataagaga 237  Q
    ||||||||| |  |||||||||||||||||||||||||||||    
T  41915579 aaaaagaaataatatactccctccggtcctatttataagaga 41915620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 3304278 - 3304310
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||| ||||||    
T  3304278 tactccctccggtcctatttataagaaaatttt 3304310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 8793875 - 8793843
Alignment:
Q  203 aaaataatactccctccggtcctatttataaga 235  Q
    |||||||||||| ||||||||||||||||||||    
T  8793875 aaaataatactctctccggtcctatttataaga 8793843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 31654613 - 31654641
Alignment:
Q  210 tactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||    
T  31654613 tactccctccggtcctatttataagagaa 31654641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 34028536 - 34028504
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||| |||||||    
T  34028536 ataatactccctccggtcctatttacaagagaa 34028504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 8099668 - 8099628
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  8099668 aaaaaaaatactccctccggtcctatttataagagaatttt 8099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 26602456 - 26602421
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  26602456 taatactccctccggtcctatttataagagaatttt 26602421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 9644828 - 9644794
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  9644828 aatactccctccggtcctatttataagagaatttt 9644794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 9650845 - 9650811
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  9650845 aatactccctccggtcctatttataagagaatttt 9650811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 6068697 - 6068664
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  6068697 atactccctccggtcctatttataagagaatttt 6068664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 6330246 - 6330213
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  6330246 atactccctccggtcctatttataagagaatttt 6330213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 11572144 - 11572177
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  11572144 atactccctccggtcctatttataagagaatttt 11572177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 13853592 - 13853625
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  13853592 atactccctccggtcctatttataagagaatttt 13853625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 2830465 - 2830433
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  2830465 tactccctccggtcctatttataagagaatttt 2830433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 8382969 - 8383001
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  8382969 tactccctccggtcctatttataagagaatttt 8383001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 13853733 - 13853695
Alignment:
Q  200 agaaaaataatactccctccggtcctatttataagagaa 238  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  13853733 agaaaaataatactaccttcggtcctatttataagagaa 13853695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 24949624 - 24949658
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||| |||||||    
T  24949624 aaataatactccctccggtcctatttacaagagaa 24949658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 33052792 - 33052826
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||| ||||||||||||||||||||||||||    
T  33052792 aatactccatccggtcctatttataagagaatttt 33052826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 22896593 - 22896560
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    |||||||| |||||||||||||||||||||||||    
T  22896593 atactcccgccggtcctatttataagagaatttt 22896560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 35031000 - 35031033
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||| ||||||||||||||||||||||||||||    
T  35031000 atacttcctccggtcctatttataagagaatttt 35031033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 8417793 - 8417825
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||| ||||||||||||||||||||||||    
T  8417793 tactcccttcggtcctatttataagagaatttt 8417825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 9644688 - 9644724
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  9644688 aaaaatattactacctccggtcctatttataagagaa 9644724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 9650705 - 9650741
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  9650705 aaaaatattactacctccggtcctatttataagagaa 9650741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 17992118 - 17992086
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||| ||||||||||||||||||||||||    
T  17992118 tactcccttcggtcctatttataagagaatttt 17992086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 22896471 - 22896499
Alignment:
Q  210 tactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||    
T  22896471 tactccctccggtcctatttataagagaa 22896499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 31971021 - 31971057
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||| |||||| |||||||    
T  31971021 aaaaataatactccctccggtcttatttacaagagaa 31971057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 49394584 - 49394500
Alignment:
Q  127 gaacaactcttgcaaatgcacaacctcaaataaaatttatttagacatacacacatgaatgataaatttaaaaagaaaaataata 211  Q
    |||||||||||||| |  ||||||| ||||| |||||||||| | || |||| |||||||| |||| || |||||||||||||||    
T  49394584 gaacaactcttgcatagacacaaccacaaatgaaatttattttggcaaacacccatgaatggtaaagtttaaaagaaaaataata 49394500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 6013329 - 6013368
Alignment:
Q  203 aaaataatactccctccggtcctatttataagagaatttt 242  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  6013329 aaaatattactccctccggtcctatttataagagaatttt 6013368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 10298111 - 10298077
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  10298111 aatactccctccggtcctatttataagagaatttt 10298077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 40690994 - 40691028
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  40690994 aatactccctccggtcctatttataagagaatttt 40691028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 8437556 - 8437523
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  8437556 atactccctccggtcctatttataagagaatttt 8437523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 8817381 - 8817418
Alignment:
Q  205 aataatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8817381 aataatactccttccggtcctatttataagagaatttt 8817418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 46208161 - 46208128
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  46208161 atactccctccggtcctatttataagagaatttt 46208128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 49823380 - 49823413
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  49823380 atactccctccggtcctatttataagagaatttt 49823413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 51406804 - 51406771
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  51406804 atactccctccggtcctatttataagagaatttt 51406771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 2787832 - 2787864
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  2787832 tactccctccggtcctatttataagagaatttt 2787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 4238582 - 4238622
Alignment:
Q  198 aaagaaaaataatactccctccggtcctatttataagagaa 238  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  4238582 aaagataaataatactacctccggtcctatttataagagaa 4238622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 19557052 - 19557084
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  19557052 tactccctccggtcctatttataagagaatttt 19557084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 21295326 - 21295358
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  21295326 tactccctccggtcctatttataagagaatttt 21295358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 34080030 - 34080062
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  34080030 tactccctccggtcctatttataagagaatttt 34080062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 38964384 - 38964420
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38964384 aaaaataatactacctccggtcctatttataagagaa 38964420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 38964522 - 38964490
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  38964522 tactccctccggtcctatttataagagaatttt 38964490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 48340527 - 48340495
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  48340527 tactccctccggtcctatttataagagaatttt 48340495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 17653844 - 17653810
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||| ||||||||||||||||||||||||||||    
T  17653844 aatactacctccggtcctatttataagagaatttt 17653810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 4238725 - 4238692
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||| ||||||||||||||||||||||||||||    
T  4238725 atactacctccggtcctatttataagagaatttt 4238692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 8266388 - 8266355
Alignment:
Q  202 aaaaataatactccctccggtcctatttataaga 235  Q
    ||||| ||||||||||||||||||||||||||||    
T  8266388 aaaaagaatactccctccggtcctatttataaga 8266355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 9111497 - 9111526
Alignment:
Q  213 tccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||    
T  9111497 tccctccggtcctatttataagagaatttt 9111526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 22722062 - 22722029
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||| ||||||||||||||||||||||||||    
T  22722062 atactccatccggtcctatttataagagaatttt 22722029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 37509052 - 37509019
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||| ||||||||||||||||||||||||||||    
T  37509052 atactacctccggtcctatttataagagaatttt 37509019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 42507358 - 42507387
Alignment:
Q  213 tccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||    
T  42507358 tccctccggtcctatttataagagaatttt 42507387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 46208029 - 46208058
Alignment:
Q  209 atactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||||||    
T  46208029 atactccctccggtcctatttataagagaa 46208058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 17653712 - 17653740
Alignment:
Q  210 tactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||    
T  17653712 tactccctccggtcctatttataagagaa 17653740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 21662882 - 21662910
Alignment:
Q  207 taatactccctccggtcctatttataaga 235  Q
    |||||||||||||||||||||||||||||    
T  21662882 taatactccctccggtcctatttataaga 21662910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 22721927 - 22721959
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    |||||||| ||||||||||||||||||||||||    
T  22721927 ataatactacctccggtcctatttataagagaa 22721959  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 26123147 - 26123111
Alignment:
Q  202 aaaaataatactccctccggtcctatttataagagaa 238  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  26123147 aaaaatagtactccctccggtcctatttacaagagaa 26123111  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 37508921 - 37508949
Alignment:
Q  210 tactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||    
T  37508921 tactccctccggtcctatttataagagaa 37508949  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 40215050 - 40215022
Alignment:
Q  209 atactccctccggtcctatttataagaga 237  Q
    |||||||||||||||||||||||||||||    
T  40215050 atactccctccggtcctatttataagaga 40215022  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 40464678 - 40464646
Alignment:
Q  203 aaaataatactccctccggtcctatttataaga 235  Q
    ||||| |||||||||||||||||||||||||||    
T  40464678 aaaattatactccctccggtcctatttataaga 40464646  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 51698109 - 51698141
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||| |||||||    
T  51698109 ataatactccctccggtcctatttacaagagaa 51698141  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 53441903 - 53441931
Alignment:
Q  207 taatactccctccggtcctatttataaga 235  Q
    |||||||||||||||||||||||||||||    
T  53441903 taatactccctccggtcctatttataaga 53441931  T

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Target: scaffold0482 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 12993 - 12958
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  12993 taatactccctccggtcctatttataagagaatttt 12958  T

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Target: scaffold0464 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 6124 - 6163
Alignment:
Q  203 aaaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  6124 aaaataatactccctccggtcctatttataagaaaatttt 6163  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 9981784 - 9981745
Alignment:
Q  203 aaaataatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  9981784 aaaataatattccctccggtcctatttataagagaatttt 9981745  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 12483625 - 12483660
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  12483625 taatactccctccggtcctatttataagagaatttt 12483660  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 14984970 - 14984935
Alignment:
Q  207 taatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  14984970 taatactccctccggtcctatttataagagaatttt 14984935  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 1051020 - 1050986
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||||    
T  1051020 aatactccctccggtcctatttataagagaatttt 1050986  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 47969835 - 47969793
Alignment:
Q  200 agaaaaataatactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  47969835 agaaaaataatactccctccggtcctatttataaaataatttt 47969793  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 25694450 - 25694417
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||||||||||||||||||||||    
T  25694450 atactccctccggtcctatttataagagaatttt 25694417  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 11796063 - 11796031
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  11796063 tactccctccggtcctatttataagagaatttt 11796031  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 26471065 - 26471097
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  26471065 tactccctccggtcctatttataagagaatttt 26471097  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 27159358 - 27159390
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  27159358 tactccctccggtcctatttataagagaatttt 27159390  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 31842795 - 31842827
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  31842795 tactccctccggtcctatttataagagaatttt 31842827  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 39401966 - 39401998
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  39401966 tactccctccggtcctatttataagagaatttt 39401998  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 44668093 - 44668125
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  44668093 tactccctccggtcctatttataagagaatttt 44668125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 47777481 - 47777513
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  47777481 tactccctccggtcctatttataagagaatttt 47777513  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 11897048 - 11897082
Alignment:
Q  204 aaataatactccctccggtcctatttataagagaa 238  Q
    |||| ||||||||||||||||||||||||||||||    
T  11897048 aaatgatactccctccggtcctatttataagagaa 11897082  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 238
Target Start/End: Complemental strand, 11897186 - 11897156
Alignment:
Q  208 aatactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||||    
T  11897186 aatactccctccggtcctatttataagagaa 11897156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 34042828 - 34042794
Alignment:
Q  208 aatactccctccggtcctatttataagagaatttt 242  Q
    ||||||||||||||| |||||||||||||||||||    
T  34042828 aatactccctccggttctatttataagagaatttt 34042794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 16448239 - 16448210
Alignment:
Q  209 atactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||||||    
T  16448239 atactccctccggtcctatttataagagaa 16448210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 17556884 - 17556855
Alignment:
Q  209 atactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||||||    
T  17556884 atactccctccggtcctatttataagagaa 17556855  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 34718884 - 34718917
Alignment:
Q  204 aaataatactccctccggtcctatttataagaga 237  Q
    ||||||||||||||||||||||||||| ||||||    
T  34718884 aaataatactccctccggtcctatttacaagaga 34718917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 47216698 - 47216731
Alignment:
Q  209 atactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||| |||||||||||||||||||    
T  47216698 atactccctccggtactatttataagagaatttt 47216731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 26760325 - 26760297
Alignment:
Q  207 taatactccctccggtcctatttataaga 235  Q
    |||||||||||||||||||||||||||||    
T  26760325 taatactccctccggtcctatttataaga 26760297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 26924209 - 26924237
Alignment:
Q  207 taatactccctccggtcctatttataaga 235  Q
    |||||||||||||||||||||||||||||    
T  26924209 taatactccctccggtcctatttataaga 26924237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 26924365 - 26924337
Alignment:
Q  207 taatactccctccggtcctatttataaga 235  Q
    |||||||||||||||||||||||||||||    
T  26924365 taatactccctccggtcctatttataaga 26924337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 27159492 - 27159460
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    |||||||| ||||||||||||||||||||||||    
T  27159492 ataatactacctccggtcctatttataagagaa 27159460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 44668227 - 44668195
Alignment:
Q  206 ataatactccctccggtcctatttataagagaa 238  Q
    |||||||| ||||||||||||||||||||||||    
T  44668227 ataatactacctccggtcctatttataagagaa 44668195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 49635 - 49603
Alignment:
Q  210 tactccctccggtcctatttataagagaatttt 242  Q
    |||||||||||||||||||||||||||||||||    
T  49635 tactccctccggtcctatttataagagaatttt 49603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 77496 - 77466
Alignment:
Q  207 taatactccctccggtcctatttataagaga 237  Q
    |||||||||||||||||||||||||||||||    
T  77496 taatactccctccggtcctatttataagaga 77466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 77344 - 77372
Alignment:
Q  210 tactccctccggtcctatttataagagaa 238  Q
    |||||||||||||||||||||||||||||    
T  77344 tactccctccggtcctatttataagagaa 77372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 492303 - 492332
Alignment:
Q  209 atactccctccggtcctatttataagagaa 238  Q
    ||||||||||||||||||||||||||||||    
T  492303 atactccctccggtcctatttataagagaa 492332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 1688 - 1656
Alignment:
Q  203 aaaataatactccctccggtcctatttataaga 235  Q
    ||||||||||||||||||||| |||||||||||    
T  1688 aaaataatactccctccggtcttatttataaga 1656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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