View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_35 (Length: 236)
Name: NF12850_low_35
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 19958039 - 19957832
Alignment:
| Q |
13 |
cactgaaacaaatacaaacaacacaccacaagttgttcttccttaagtatttccataacctctaaacactctttctcactgacccttttatcatactcta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19958039 |
cactgaaacaaatacaaacaacacaccacaagttgttcttccccaagtatttccataacctttaaacactctttctcactgacccttttatcatactctt |
19957940 |
T |
|
| Q |
113 |
ctaaagcttcctctagagtcaaattttgtggtaaattccttgcaagatgaagaatttctccaacaacaccttcagacaatggtgattctttcttctggga |
212 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
19957939 |
ctaaagcctcctctagagtcaaattttgtggtaaattccttgcaagatgaagaatttcttcaacaacaccttcaggcaatggtgattctttcttctggga |
19957840 |
T |
|
| Q |
213 |
caccattt |
220 |
Q |
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|||||||| |
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| T |
19957839 |
caccattt |
19957832 |
T |
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