View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_36 (Length: 235)
Name: NF12850_low_36
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3563155 - 3563374
Alignment:
| Q |
1 |
tgccaaccagcaccataaatcaaatgcgaaattacactnnnnnnnnnngatgaaatgaagtttctgagtgcattgaacataaagagcacatagatggaag |
100 |
Q |
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| T |
3563155 |
tgccaaccagcaccataaatcaaatgcgaaattacactaaaaaaaa--gatgaaatgaagtttctgagtgcattgaacataaagagcacatagatggaag |
3563252 |
T |
|
| Q |
101 |
attacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaatatccttgcaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3563253 |
attacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagaaagcagagacttggacggaggaatatccttgcaccaa |
3563352 |
T |
|
| Q |
201 |
attgtagaggcccaatgcttct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
3563353 |
attgtagaggcccaatgcttct |
3563374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 9749488 - 9749614
Alignment:
| Q |
88 |
acatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaat |
187 |
Q |
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| T |
9749488 |
acatagatggaatgttgcaacccatttccatgagtttttcatcgatgagtactttatcatgcattaatctccaagctagaagagatttttatgggggtat |
9749587 |
T |
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| Q |
188 |
atccttgcaccaaattgtagaggccca |
214 |
Q |
| |
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| T |
9749588 |
atccttacaccaaattgttgatgccca |
9749614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 12053842 - 12053963
Alignment:
| Q |
81 |
aaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacg |
180 |
Q |
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||||||||||| ||||| ||||| || || |||| | | ||||| |||||| | || | |||||||| | |||||||||||||| |||||| || || | |
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| T |
12053842 |
aaagagcacattgatgggagattgcagcctctttgcttcagcttatcatcaataggcattttgtcatgaagtaatctccaagcaatcagagatttagaag |
12053941 |
T |
|
| Q |
181 |
gaggaatatccttgcaccaaat |
202 |
Q |
| |
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|||| ||||| |||||||||| |
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| T |
12053942 |
gaggtatatcaatgcaccaaat |
12053963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 14169886 - 14170021
Alignment:
| Q |
87 |
cacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaa |
186 |
Q |
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||||| |||||||| || ||||| |||||||| || |||||||| || ||||| ||||||||||||||||||||||| |||||||| ||| | ||||||| |
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| T |
14169886 |
cacattgatggaaggttgcatcctctttccatgagtttttcatctgttggaactttgtcatgcattaatctccaagctagcagagatttgaatggaggaa |
14169985 |
T |
|
| Q |
187 |
tatccttgcaccaaattgtagaggcccaatgcttct |
222 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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|
| T |
14169986 |
tatccttgcaccaaattgtagaggcccaatgtttct |
14170021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 30254104 - 30254141
Alignment:
| Q |
123 |
ttttcatcagtgggaaccttgtcatgcattaatctcca |
160 |
Q |
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||||||||||| ||||||||||||||||| |||||||| |
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| T |
30254104 |
ttttcatcagttggaaccttgtcatgcatcaatctcca |
30254141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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