View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12850_low_37 (Length: 231)

Name: NF12850_low_37
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12850_low_37
NF12850_low_37
[»] chr8 (12 HSPs)
chr8 (16-221)||(2007756-2007961)
chr8 (18-221)||(2004376-2004579)
chr8 (16-221)||(1969060-1969265)
chr8 (18-221)||(2014776-2014979)
chr8 (18-221)||(2018159-2018362)
chr8 (17-220)||(2436861-2437064)
chr8 (16-212)||(1965118-1965314)
chr8 (16-221)||(1963448-1963653)
chr8 (16-212)||(2011380-2011576)
chr8 (117-221)||(10201811-10201915)
chr8 (117-221)||(10208884-10208988)
chr8 (79-146)||(3770193-3770260)
[»] chr1 (2 HSPs)
chr1 (16-205)||(5906108-5906297)
chr1 (16-205)||(5902624-5902813)
[»] chr6 (2 HSPs)
chr6 (100-148)||(845007-845055)
chr6 (100-148)||(870291-870339)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 2007961 - 2007756
Alignment:
Q  16 ctgggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaac 115  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2007961 ctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttgac 2007862  T
Q  116 gcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2007861 gcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttg 2007762  T
Q  216 agtgaa 221  Q
    ||||||    
T  2007761 agtgaa 2007756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 2004579 - 2004376
Alignment:
Q  18 gggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaacgc 117  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| || |    
T  2004579 gggttcttggagagaaccaaggagaaaggttttgtcattacatcatgggtgccgcagattcaaatcctaagtcacaactcagtcggcgggttcttgactc 2004480  T
Q  118 attgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttcag 217  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||  |||| || ||||||||||||||||||||||||||||||||||||||||| ||    
T  2004479 attgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaataacatggcctctatttgctgagcagaaaatgaatgcggttttgttgag 2004380  T
Q  218 tgaa 221  Q
    ||||    
T  2004379 tgaa 2004376  T

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Target: chr8; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 1969060 - 1969265
Alignment:
Q  16 ctgggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaac 115  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  1969060 ctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgac 1969159  T
Q  116 gcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttc 215  Q
     ||||||||||||||||||||||||||||||||| |||| ||||||||  ||||||| |||||| | ||||||||||||||||||||||| |||||| |     
T  1969160 tcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctg 1969259  T
Q  216 agtgaa 221  Q
    ||||||    
T  1969260 agtgaa 1969265  T

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Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 2014979 - 2014776
Alignment:
Q  18 gggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaacgc 117  Q
    |||||||||||||| || |||||  ||||  | |||||| |||||||||| || ||||||||||||||  ||||||  ||||||||||||||||| || |    
T  2014979 gggttcttggagagaacaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactc 2014880  T
Q  118 attgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttcag 217  Q
    | ||||| ||||||||||  |||||||||||| |||| ||||||||  ||||||| |||||||||||||||||||||| || ||||||||||||||| ||    
T  2014879 actgtggttggaattcaatgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgag 2014780  T
Q  218 tgaa 221  Q
    ||||    
T  2014779 tgaa 2014776  T

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Target: chr8; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 2018362 - 2018159
Alignment:
Q  18 gggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaacgc 117  Q
    |||||||||||||| |  |||||  ||||  | |||||| |||||||||| || ||||||||||||||  ||||||  ||||||||||||||||| || |    
T  2018362 gggttcttggagagaaaaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactc 2018263  T
Q  118 attgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttcag 217  Q
    | ||||| ||||||||||| |||||||||||| |||| ||||||||  ||||||| |||||||||||||||||||||| || ||||||||||||||| ||    
T  2018262 actgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgag 2018163  T
Q  218 tgaa 221  Q
    ||||    
T  2018162 tgaa 2018159  T

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Target: chr8; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 2436861 - 2437064
Alignment:
Q  17 tgggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaacg 116  Q
    ||||||| | ||||| ||||||||  ||||  | |||||| |||||||||| || ||| |||||||||| |||||||  ||||||||||| ||||| |      
T  2436861 tgggttcatagagagaaccaaggatcaagggatggttattccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagt 2436960  T
Q  117 cattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttca 216  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||  ||||||| |||||||| ||||| ||||||| || |||| |||||||||| |    
T  2436961 cactgtggctggaattcaacccttgagagtgtggtgcatggtgtgccactaatcacatggcctctttttgccgagcagagaacgaattcggttttgttga 2437060  T
Q  217 gtga 220  Q
    ||||    
T  2437061 gtga 2437064  T

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Target: chr8; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 1965118 - 1965314
Alignment:
Q  16 ctgggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaac 115  Q
    ||||||| |||||||| || ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |  ||| |||| |||||||| |     
T  1965118 ctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgag 1965217  T
Q  116 gcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttg 212  Q
     || ||||| ||||| ||||||||||| ||||||||||| || |||||  ||||||| |||||| | |||||||| |||  ||||||||| ||||||    
T  1965218 tcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcacatggcctatgtttgctgaacagggaatgaatgcagttttg 1965314  T

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Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 1963448 - 1963653
Alignment:
Q  16 ctgggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaac 115  Q
    ||||||| |||||||| ||||||||  ||||  | ||| || |||||||||| || |||||||||||||| |||||||  ||  |||||||||| ||  |    
T  1963448 ctgggtttttggagagaaccaaggaacaagggatggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtc 1963547  T
Q  116 gcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttc 215  Q
     |||||||| ||||||||||||||||||||||||||| | ||||||||  ||||||| |||||||| | ||||||||||| ||  ||||| |||||| ||    
T  1963548 tcattgtggttggaattcaacccttgagagtgtggtgtatggtgtgccactaatcacttggcctctgtatgctgagcagagaacaaatgcagttttgctc 1963647  T
Q  216 agtgaa 221  Q
     |||||    
T  1963648 tgtgaa 1963653  T

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Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 2011576 - 2011380
Alignment:
Q  16 ctgggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaac 115  Q
    ||||||| |||||||| ||||| ||| |||||||||| |||||||||||||| || |||||||||||||| ||||| |  |||||||| |||||||| |     
T  2011576 ctgggtttttggagagaaccaaagaggaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcagttggcgggttcttgag 2011477  T
Q  116 gcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttg 212  Q
     || ||||| ||||  ||||| ||||| |||||||| || || |||||  ||||||| |||||| | |||||||| |||  ||||||||| ||||||    
T  2011476 tcactgtggttggagctcaacacttgaaagtgtggttcatggggtgccactaatcacatggcctatgtttgctgaacagggaatgaatgcagttttg 2011380  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 10201915 - 10201811
Alignment:
Q  117 cattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttca 216  Q
    |||||||| ||||||||||| ||||||||||||||| | |||||||| || ||  | ||||| || | ||||||||| || |||||||| ||||| || |    
T  10201915 cattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattga 10201816  T
Q  217 gtgaa 221  Q
    |||||    
T  10201815 gtgaa 10201811  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 10208988 - 10208884
Alignment:
Q  117 cattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttca 216  Q
    |||||||| ||||||||||| ||||||||||||||| | |||||||| || ||  | ||||| || | ||||||||| || |||||||| ||||| || |    
T  10208988 cattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattga 10208889  T
Q  217 gtgaa 221  Q
    |||||    
T  10208888 gtgaa 10208884  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 3770260 - 3770193
Alignment:
Q  79 aaatcctaagtcacaactcagttggtgggttcttaacgcattgtggctggaattcaacccttgagagt 146  Q
    |||||||||||||||| |||   ||||| || ||||| |||||||| ||||||||||| |||||||||    
T  3770260 aaatcctaagtcacaattcaacaggtggatttttaacacattgtggttggaattcaacacttgagagt 3770193  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 5906108 - 5906297
Alignment:
Q  16 ctgggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaac 115  Q
    |||||||||||||||| ||||||||| ||||  | |||||| |||||||||| || |||||| ||||||| |||||||  ||||||||||| ||||| |     
T  5906108 ctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgag 5906207  T
Q  116 gcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgc 205  Q
     |||||||| |||| ||||| ||||||||| | | |||| ||||||||  ||||||| |||||||| ||||||||||||| |||||||||    
T  5906208 tcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatcacatggcctctgtttgctgagcagagaatgaatgc 5906297  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 5902624 - 5902813
Alignment:
Q  16 ctgggttcttggagaggaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttaac 115  Q
    |||||||||||||||| ||||||||| ||||  | |||||| |||||||||| || |||||| |||  || |||||||  ||||||||||| ||||| |     
T  5902624 ctgggttcttggagagaaccaaggagcaagggatggttattccatcatgggcacctcagattgaaacacttagtcacagatcagttggtggattcttgag 5902723  T
Q  116 gcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgc 205  Q
     || |||||||||||||||| ||||||||||||| |||| ||||||||  ||||||| |||||| | |||| |||||| | |||||||||    
T  5902724 tcactgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcctttgtttggtgagcaaagaatgaatgc 5902813  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 845055 - 845007
Alignment:
Q  100 ttggtgggttcttaacgcattgtggctggaattcaacccttgagagtgt 148  Q
    |||||||||| ||||| |||||||| ||||||||||| ||||| |||||    
T  845055 ttggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt 845007  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 870339 - 870291
Alignment:
Q  100 ttggtgggttcttaacgcattgtggctggaattcaacccttgagagtgt 148  Q
    |||||||||| ||||| |||||||| ||||||||||| ||||| |||||    
T  870339 ttggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt 870291  T

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