View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_4 (Length: 583)
Name: NF12850_low_4
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 41075134 - 41074813
Alignment:
| Q |
14 |
cacagacatgcttaaaaaccaccaaataatccaagcatacaagctctcgttgaatataattcatactacaatgagcactcttcaccagcacaccaatcac |
113 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075134 |
cacagacatacttaaaaatcaccaaataatccaagcatacaagctctcgttaaatataattcatactacaatgagcactcttcaccagcacaccaatcac |
41075035 |
T |
|
| Q |
114 |
tccaagtatttgcattcaaactactactaaactgtgtcaacactactggcaaatcagaatatgtaccctactgcaagcacctcagagaataccatcacca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41075034 |
tccaagtatttgcattcaaactactactaaactgtgtcaacactactggcaaatcagaatatgtaccctactgcaagcacctcagagaatactatcacca |
41074935 |
T |
|
| Q |
214 |
tattaacttccagagtcctgatcctcgaaggtatatcaactaggaactgcccgtttacaaaatcagcaacatggcacaaaacacagcagtattccagagc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074934 |
tattaacttccagagtcctgatcctcgaaggtatatcaactaggaactgcctgtttacaaaatcagcaacatggcacaaaacacagcagtattccagagc |
41074835 |
T |
|
| Q |
314 |
agaaaactttcaatgacataaa |
335 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41074834 |
agaaaactttcaatgacataaa |
41074813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 566
Target Start/End: Complemental strand, 41086622 - 41086064
Alignment:
| Q |
19 |
acatgcttaaaaaccaccaaataatccaagcatacaagctctcgttgaatataattcatactacaatgagcactcttcaccagcacaccaatcactccaa |
118 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
41086622 |
acatacttaaaaactaccaaataatccaagcatacaaactctggttaaatataatacataatacaatgagcactcttcaccagcacaccaatcacttcaa |
41086523 |
T |
|
| Q |
119 |
gtatttgcattcaaactactactaaactgtgtcaacactactggcaaatcagaatatgtaccctactgcaagcacctcagagaataccatcaccatatta |
218 |
Q |
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||||||||||||||||| ||||| |||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
41086522 |
gtatttgcattcaaactgctactgaactgtgttaacaatactggcaaatcagaacatgtactctactgcaagcacctcagagaatactatcaccatatta |
41086423 |
T |
|
| Q |
219 |
acttccagagtcctgatcctcgaaggtatatcaactaggaactgcccgtttacaaaatcagcaacatggcacaaaacacagcagtattccagagcagaaa |
318 |
Q |
| |
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||| ||||||||| |||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| ||||| |||| |||||||||||| |
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| T |
41086422 |
actaccagagtcccaatcctccaaggtatatcaactgggaacatccaatttacaaaatcagcaacatggcacaggacacaacagtgctccagagcagaac |
41086323 |
T |
|
| Q |
319 |
actttcaatgacataaactcaccattagatccacaatcatca---ttgtttcagtttagtgacaacaaacattctgctatttccagccaaaaccat---- |
411 |
Q |
| |
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|| ||| |||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||| |
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| T |
41086322 |
acattccatgacataaactcagcattagatccgcaatcatcaaatttgtttcagtttagcgacaacaatcattct-ttatttccagccaaaaccatcaaa |
41086224 |
T |
|
| Q |
412 |
--gtcataaatga--tctgacacaccagaggtacaaaacagtttctcacctttcatacagataaattctgatcaaccagaagaacaggtgaagctattga |
507 |
Q |
| |
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| |||||||| | | |||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41086223 |
gagctataaatgatttataacacaccaga--tacaaaacagtgtcacacctttcacacagataaattctgatcaaccagaagaacaggtgaagctatcca |
41086126 |
T |
|
| Q |
508 |
caattt-gcaatcccacaccactaggaaagact--caaactaaaaccgtcttaatgagatat |
566 |
Q |
| |
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|| ||| ||||||||| ||||||| ||||||| ||||||| || ||||| ||||||||| |
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| T |
41086125 |
cactttagcaatcccatgccactagaaaagactcgcaaactagaaatgtctttatgagatat |
41086064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 414 - 566
Target Start/End: Complemental strand, 41074818 - 41074666
Alignment:
| Q |
414 |
cataaatgatctgacacaccagaggtacaaaacagtttctcacctttcatacagataaattctgatcaaccagaagaacaggtgaagctattgacaattt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074818 |
cataaatgatctgacacaccagaggtacaaaacagtttctcacctttcatacagataaattctgatcaaccagaagaacaggtgaagctattgacaattt |
41074719 |
T |
|
| Q |
514 |
gcaatcccacaccactaggaaagactcaaactaaaaccgtcttaatgagatat |
566 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074718 |
gcaatcccacaccactaggaaagactcaaactaaaaccgtcttaatgagatat |
41074666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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