View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_5 (Length: 481)
Name: NF12850_low_5
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 54605926 - 54606386
Alignment:
| Q |
1 |
ttactagcatgcttaaatttcctgtcatagttacttatggtgcgtgtaaataaataattggctcaaattcactaggtaagttaaataactggctttagtt |
100 |
Q |
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| T |
54605926 |
ttactagcatgcttaaattccctgtcatagttacttatggtgcgtgtaaataaataattggctcaaattcactagcctagctaaataaatggctttagtt |
54606025 |
T |
|
| Q |
101 |
acccaagaacaattcataaaaatgaccaggaaattgactaattctttaactcattcaaaggttacttgtcatatgcaatgaaagaaaga----ctaattc |
196 |
Q |
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| T |
54606026 |
acccaagaacaattcataaaaatgaccaagaaattggctaattctttaactcattcaaaggttacttgtcatatggaatgaaagaaagactagctaattc |
54606125 |
T |
|
| Q |
197 |
gttaacatggctatggtataacaagttactatctacaattgaaactagtgacgcattgaagcaccacaaactgcaaggtct--acaaaactgaacatctc |
294 |
Q |
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| T |
54606126 |
gttaacatggctatggtataacaagttactatctacaattgaaactagtgacgcattgaagcaccacaaactgcaaggtctacacaaaactgaacatctc |
54606225 |
T |
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| Q |
295 |
ctaaaagcagaaaaattgtgtacaaattcagcagaaaaagcagaataatctgtccaaaact-nnnnnnnncagcctcttgaaactattgaacaaaaacaa |
393 |
Q |
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| T |
54606226 |
ctcaaagcagaaaaattgtgtacaaattcagcagaaa---------aatctgtccaaaactaaaaaaaaacagcctcttgaaactattgaacaaaaacaa |
54606316 |
T |
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| Q |
394 |
tgttgtgtatcttgattgtcttctgttttggtgagaagaaaagaaagaagttacaagtagattagagttg |
463 |
Q |
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| T |
54606317 |
tgttgtgtatcttgattgtcttctgttttggtgagaagaaaagaaagaagttacaagtagattagagttg |
54606386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 34386501 - 34386447
Alignment:
| Q |
203 |
atggctatggtataacaag-ttactatctacaattgaaactagtgacgcattgaa |
256 |
Q |
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| T |
34386501 |
atggctatggtataacaaggttactatccacaattgaaactagtgacacattgaa |
34386447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 454
Target Start/End: Complemental strand, 40193255 - 40193201
Alignment:
| Q |
400 |
gtatcttgattgtcttctgttttggtgagaagaaaagaaagaagttacaagtaga |
454 |
Q |
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| T |
40193255 |
gtattttgattgttttctgttttgtcgagaagaaaataaagaagttacaagtaga |
40193201 |
T |
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