View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12850_low_7 (Length: 461)

Name: NF12850_low_7
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12850_low_7
NF12850_low_7
[»] chr3 (3 HSPs)
chr3 (14-332)||(48236418-48236736)
chr3 (341-443)||(48236288-48236390)
chr3 (385-443)||(25252041-25252099)
[»] chr1 (1 HSPs)
chr1 (140-196)||(3685864-3685920)
[»] chr6 (1 HSPs)
chr6 (368-443)||(2732920-2732995)
[»] chr7 (1 HSPs)
chr7 (380-443)||(1110410-1110473)
[»] scaffold0491 (1 HSPs)
scaffold0491 (381-425)||(4388-4432)
[»] chr8 (3 HSPs)
chr8 (381-425)||(18737689-18737733)
chr8 (381-425)||(18747547-18747591)
chr8 (383-443)||(42843363-42843423)
[»] chr5 (1 HSPs)
chr5 (361-441)||(43283418-43283498)
[»] chr4 (1 HSPs)
chr4 (370-443)||(415131-415204)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 48236736 - 48236418
Alignment:
Q  14 agagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236736 agagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagatt 48236637  T
Q  114 gaagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48236636 gaagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatacggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtca 48236537  T
Q  214 aactcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgtatcaacattttttctttgtaccctaaatattaaccatt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48236536 aactcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgcatcaacattttttctttgtaccctaaatattaaccatt 48236437  T
Q  314 taataatgcaaattttccc 332  Q
    |||||||||||||||||||    
T  48236436 taataatgcaaattttccc 48236418  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 341 - 443
Target Start/End: Complemental strand, 48236390 - 48236288
Alignment:
Q  341 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaa 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48236390 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcactgttatttcgggatatgctatttagtgtaaaatgttgtcaa 48236291  T
Q  441 ata 443  Q
    |||    
T  48236290 ata 48236288  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 25252041 - 25252099
Alignment:
Q  385 atttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaata 443  Q
    |||||||||||||||| || ||||| |||| ||||||||||  ||||||||||| ||||    
T  25252041 atttgaacaaatcgctcttgtttcgtgatacgctatttagtacaaaatgttgtctaata 25252099  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 3685864 - 3685920
Alignment:
Q  140 atcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatca 196  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3685864 atcaatgaaaataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatca 3685920  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 443
Target Start/End: Original strand, 2732920 - 2732995
Alignment:
Q  368 cactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaata 443  Q
    ||||||| | ||| ||||||||||||||||||| || ||| | |||||||||||||||  ||||||||||||||||    
T  2732920 cactatagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaata 2732995  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 1110473 - 1110410
Alignment:
Q  380 gcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaata 443  Q
    ||||||||||||||||| ||| || |||||||||||||||||||||   || ||||||||||||    
T  1110473 gcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaata 1110410  T

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Target: scaffold0491 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 4388 - 4432
Alignment:
Q  381 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 425  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  4388 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 4432  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 18737689 - 18737733
Alignment:
Q  381 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 425  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  18737689 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 18737733  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 18747547 - 18747591
Alignment:
Q  381 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 425  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||    
T  18747547 cgaaatttgaacaaattgctatagtttcgggatatgctatttagt 18747591  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 42843363 - 42843423
Alignment:
Q  383 aaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaata 443  Q
    |||||||||||||| ||| || || ||||||| |||||| ||| |||| ||||||||||||    
T  42843363 aaatttgaacaaattgctattgttccgggataagctattaagtataaattgttgtcaaata 42843423  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 43283498 - 43283418
Alignment:
Q  361 gctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaa 441  Q
    ||||| |||||||| ||||||| |||||||||||||||||||| || ||  ||| ||||||| |   ||||||||||||||    
T  43283498 gctatagcactatagcatagcgtaatttgaacaaatcgctgttgttccgcaatacgctatttgggacaaaatgttgtcaaa 43283418  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 415131 - 415204
Alignment:
Q  370 ctataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaata 443  Q
    ||||| ||||||  ||||||||||| ||||| || ||||| ||| |||||||||||  |||||||||| |||||    
T  415131 ctatagcatagcagaatttgaacaagtcgctattgtttcgtgatttgctatttagtacaaaatgttgtgaaata 415204  T

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