View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12850_low_8 (Length: 452)
Name: NF12850_low_8
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_8 |
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| [»] chr4 (8 HSPs) |
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| [»] scaffold1254 (1 HSPs) |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 48 - 452
Target Start/End: Complemental strand, 18732280 - 18731890
Alignment:
| Q |
48 |
tttggtgtataaacaaatatctaactaatgtcaccaattttaaaagtatgtgcatgagaaatgttaaagattcaaatagtattatttataccaagagaca |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |
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| T |
18732280 |
tttggtgtataaacaaatatctaactaatgtcaccaattttaaaagtatgtgcatgagaaatgttaaagatacaaatagtattatttatacaacgagact |
18732181 |
T |
|
| Q |
148 |
taaatttttaccttttttatacctttctttagctaaagttactttac--------gaaatggcaaggaaatttcccacttggtaaagtgtagaaccaaat |
239 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18732180 |
t------------------tacctttctttagctaaagttactttacagaagaacgaaatggcaaggaaatttcccacttggtaaagtgtagaaccaaat |
18732099 |
T |
|
| Q |
240 |
taaataaaagcagagggtcctactaatagtacaatgaaaacatgaagaaattgccaagaagatgtggcagtagaatgttatttactgc-cggtccacac- |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | | || || |
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| T |
18732098 |
-----aaaagcagagggtcctactaatagtacaatgaaaacacgaagaaattgccaagaagatgtggcagtagaatgttatttactccttgttacatact |
18732004 |
T |
|
| Q |
338 |
ggctataggaagtagttcaggaagttgtacagaccatttttgtcataagttttctccttcttatatagttacatactcaagactctcacatcacagacca |
437 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |
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| T |
18732003 |
atatataggaagtag-tcaggaagtttaacagaccatttttgtcataagttttctccttgttatatagttacatactgaagactctcacatcacatacca |
18731905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 18656537 - 18656352
Alignment:
| Q |
48 |
tttggtgtataaacaaatatctaactaatgtcaccaattttaaaagtatgtgcatgagaaatgttaaagattcaaatagtattatttataccaagagaca |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18656537 |
tttggtgtataaacaaatatctaactaatgtcaccaattttaaaagcatgtgcatgagaaatgttaaagatacaaatagtattatttataccaagagaca |
18656438 |
T |
|
| Q |
148 |
taaatttttaccttttttatacctttctttagctaaagttactt--------tacgaaatggcaaggaaatttcccacttggtaaa |
225 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
18656437 |
taaatttttaccttttttttacctttctttagctaaagttactttacagaagtacgaaatggcaaggaaaattcccacttggtaaa |
18656352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 282 - 452
Target Start/End: Complemental strand, 18680131 - 18679953
Alignment:
| Q |
282 |
tgaagaaattgccaagaagatgtggcagtagaatgttatttact---------gccggtccacacggctataggaagtagttcaggaagttgtacagacc |
372 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
18680131 |
tgaagaaattagcaagaagatgtggcagtagaatgttatttaattaatgtgtgattggtccacacggctataggaagtag-tcaggaagtttaacagacc |
18680033 |
T |
|
| Q |
373 |
atttttgtcataagttttctccttcttatatagttacatactcaagactctcacatcacagaccacaaaaacttaaactc |
452 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
18680032 |
atttttgtcataagttttctccttgttatatagttacatactgaagactctcacatcacataccacaaaaacttaaactc |
18679953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 241 - 365
Target Start/End: Complemental strand, 18656037 - 18655908
Alignment:
| Q |
241 |
aaataaaagcagagggtcctactaatagtacaatgaaaacatgaagaaattgccaagaagatgtggcagtagaatgttatttactg-----ccggtccac |
335 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |
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| T |
18656037 |
aaataaaatcagagggtcctactaatagtacaatgaaaacatgaagaaattgccaagaagatgtggcattacaatgttatttactgtgtgattggtccac |
18655938 |
T |
|
| Q |
336 |
acggctataggaagtagttcaggaagttgt |
365 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
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| T |
18655937 |
acggctatagaaagtagttcaggaagttgt |
18655908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 18724571 - 18724497
Alignment:
| Q |
329 |
ggtccacacggctataggaagtagttcaggaagttgtacagaccatttttgtcataagttttctccttcttatata |
404 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
18724571 |
ggtccacacggctataggaagtggt-caggaagtttaacagaccatttttgtcataagttttgtccttgttatata |
18724497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 378
Target Start/End: Complemental strand, 18699966 - 18699866
Alignment:
| Q |
282 |
tgaagaaattgccaagaagatgtggcagtagaatgttatttactgcc-----ggtccacacggctataggaagtagttcaggaagttgtacagaccattt |
376 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
18699966 |
tgaagaaattagcaagaagatgtggcagtagaatgttatttaatgtgtgattggtccacacggctataggaagtag-tcaggaagtttaacagaccattt |
18699868 |
T |
|
| Q |
377 |
tt |
378 |
Q |
| |
|
|| |
|
|
| T |
18699867 |
tt |
18699866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Complemental strand, 18655909 - 18655863
Alignment:
| Q |
405 |
gttacatactcaagactctcacatcacagaccacaaaaacttaaactc |
452 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
18655909 |
gttacatactgaagactc-cacatcacataccacaaaaacttaaactc |
18655863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 18683813 - 18683768
Alignment:
| Q |
192 |
tacgaaatggcaaggaaatttcccacttggt-aaagtgtagaacca |
236 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
18683813 |
tacgaaatgggaaggaagtttcccacttggtaaaagtgtagaacca |
18683768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1254 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1254
Description:
Target: scaffold1254; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 447
Target Start/End: Complemental strand, 432 - 316
Alignment:
| Q |
329 |
ggtccacacggctataggaagtagttcaggaagttgtacagaccatttttgtcataagttttctccttcttatatagttacatactcaagactctcacat |
428 |
Q |
| |
|
|||||||||||||||||||||| | || |||||| |||||||||||||||||||||| |||||| | ||| |||||| |||| | ||||||| ||||| |
|
|
| T |
432 |
ggtccacacggctataggaagtggc-caagaagtttcacagaccatttttgtcataagtgttctcccttttaaatagtttcatattaaagactc-cacat |
335 |
T |
|
| Q |
429 |
cacagaccacaaaaactta |
447 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
334 |
cacagaccacaaaaactta |
316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 447
Target Start/End: Original strand, 7197 - 7313
Alignment:
| Q |
329 |
ggtccacacggctataggaagtagttcaggaagttgtacagaccatttttgtcataagttttctccttcttatatagttacatactcaagactctcacat |
428 |
Q |
| |
|
|||||||||||||||||||||| | || |||||| |||||||||||||||||||||| |||||| | ||| |||||| |||| | ||||||| ||||| |
|
|
| T |
7197 |
ggtccacacggctataggaagtggc-caagaagtttcacagaccatttttgtcataagtgttctcccttttaaatagtttcatattaaagactc-cacat |
7294 |
T |
|
| Q |
429 |
cacagaccacaaaaactta |
447 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7295 |
cacagaccacaaaaactta |
7313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 329 - 447
Target Start/End: Complemental strand, 27338580 - 27338464
Alignment:
| Q |
329 |
ggtccacacggctataggaagtagttcaggaagttgtacagaccatttttgtcataagttttctccttcttatatagttacatactcaagactctcacat |
428 |
Q |
| |
|
|||||||||||||||||||||| | || |||||| ||| | ||||||||||| ||||||||||||| |||||||| | |||| | ||||||| ||||| |
|
|
| T |
27338580 |
ggtccacacggctataggaagtggc-caagaagtttcacaaatcatttttgtcacaagttttctccttgttatatagatccatattaaagactc-cacat |
27338483 |
T |
|
| Q |
429 |
cacagaccacaaaaactta |
447 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27338482 |
cacagaccacaaaaactta |
27338464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 329 - 447
Target Start/End: Complemental strand, 27399320 - 27399204
Alignment:
| Q |
329 |
ggtccacacggctataggaagtagttcaggaagttgtacagaccatttttgtcataagttttctccttcttatatagttacatactcaagactctcacat |
428 |
Q |
| |
|
|||||||||||||||||||||| | || |||||| ||| | ||||||||||| ||||||||||||| |||||||| | |||| | ||||||| ||||| |
|
|
| T |
27399320 |
ggtccacacggctataggaagtggc-caagaagtttcacaaatcatttttgtcacaagttttctccttgttatatagatccatattaaagactc-cacat |
27399223 |
T |
|
| Q |
429 |
cacagaccacaaaaactta |
447 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27399222 |
cacagaccacaaaaactta |
27399204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 26655690 - 26655770
Alignment:
| Q |
366 |
acagaccatttttgtcataagttttctccttcttatatagttacatactcaagactctcacatcacagaccacaaaaactta |
447 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| ||||| |||||| ||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
26655690 |
acagatcatttttttcataagttttctccttgttataaagttacttaccaaagact-ttacatcacagaccacaaaaactta |
26655770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 26761661 - 26761741
Alignment:
| Q |
366 |
acagaccatttttgtcataagttttctccttcttatatagttacatactcaagactctcacatcacagaccacaaaaactta |
447 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| ||||| |||||| ||| |||||| | ||||||||||||||||||||||| |
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|
| T |
26761661 |
acagatcatttttttcataagttttctccttgttataaagttacttaccaaagact-ttacatcacagaccacaaaaactta |
26761741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 17090784 - 17090820
Alignment:
| Q |
24 |
aatgaacatttttattattatagttttggtgtataaa |
60 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
17090784 |
aatggacatttttattattatagttttgatgtataaa |
17090820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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