View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12851_high_5 (Length: 302)
Name: NF12851_high_5
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 520355 - 520616
Alignment:
| Q |
18 |
gttgttactgtcatggtctttgtttgcttcttggttgagcgttctatctatcgttttggaaaggtaaacaaaaacatacaatacaaactcatttctctaa |
117 |
Q |
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| T |
520355 |
gttgttactgtcatggtctttgtttgcttcttggttgagcgttctatctaccgttttggaaaggtaaacaaaaacatacaa-----actcatttctctaa |
520449 |
T |
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| Q |
118 |
aattaaaggagccttttgtttaaacaattattcatccctaattaactacttggcatgatagaataatggatagtgttgaaattggtttctatttcacata |
217 |
Q |
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| T |
520450 |
aa-----ggagccttttgtttaagcaattattcatccctaattaactacttggcatgatagaatagt---tattgttgaaattggtttctatttcacata |
520541 |
T |
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| Q |
218 |
agcaagcagctcaagaagcaataatgtaaaatagtcacatgaactgccaaaagtaattaatgacatgttcctatg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
520542 |
agcaagcagctcaagaagcaataatgtaaaatagtcacatgaactgccaaaagtaattaatgacatgttcctatg |
520616 |
T |
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