View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12851_low_1 (Length: 676)
Name: NF12851_low_1
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 362 - 660
Target Start/End: Complemental strand, 7498968 - 7498670
Alignment:
| Q |
362 |
ttcataaagttataactttaactaataatgaaattatgatatggtcactgaccctggtcaaattcaccatgagaaatccaatgttgttactcttcaatcg |
461 |
Q |
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| T |
7498968 |
ttcataaagttataactttaactaataatgaaattatgatatggtcactgaccctggtcaaattcaccatgagaaatccaatgttgttactcttcaatcg |
7498869 |
T |
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| Q |
462 |
ttttagttgctttttggtgactgtcgaggtccaaccataacaattttcgaagtcatggtcactatcaaagatgttgtatgttttcagattcttggagttg |
561 |
Q |
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| T |
7498868 |
ttttagttgctttttggtgactgttgaggtccaaccataacaattttcgaagtcatggtcactatcaaagatgttgtatgttttcagattcttggagttg |
7498769 |
T |
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| Q |
562 |
tattcaatgcctgtaaagtatttaagaaatgaagcctccaattccaagacagtgctatgtttcttttctgaaactgcatgcactataggtggtgtctca |
660 |
Q |
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| T |
7498768 |
tattcaatgcctgtaaagtatttaagaaatgaagcctccaattccaagacagtgctatgtttcttttctgaaactgcatgcactataggtggtgtctca |
7498670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 7499319 - 7499040
Alignment:
| Q |
11 |
agcacagattctttaccagccaaaaactgaggatgatttttctttgcagcagtgctgaatcccataaaaacaagtgtctgattaacaaatgacatttgag |
110 |
Q |
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| T |
7499319 |
agcacagattctttaccagccaaaaactgaggatgatttttctttgcagcagtgctgaatcccataaaaacaagtggctgattaacaaatgacatttgag |
7499220 |
T |
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| Q |
111 |
ccattggatgaaacctaggcaccacaaaaacatctccttgctgaactctaaacctcttgtttttgcatttgtcatcattgttgcttccacataccactct |
210 |
Q |
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| T |
7499219 |
ccattggatgaaacctaggcaccacaaaaacatctccttgctgaactctaaacctcttgtttttgcatttgtcatcattgttgcttccacataccactct |
7499120 |
T |
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| Q |
211 |
taccattccttccccttccaacaccactgctacttctgttgccattggattccaatgtggccccaacattgatgcctttc |
290 |
Q |
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| T |
7499119 |
taccattccttccccttccaacaccactgctacttctgttgccattggattccaatgtggccccaacattgatgcctttc |
7499040 |
T |
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