View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12851_low_11 (Length: 275)
Name: NF12851_low_11
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_low_11 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 34296357 - 34296117
Alignment:
| Q |
18 |
cctttgtagatatatgtgagactcgaattttaccaagttgaaccatctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaatac |
117 |
Q |
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| T |
34296357 |
cctttgtagatatatgtgagactcgaattttaccaagttgaaccatctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaatac |
34296258 |
T |
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| Q |
118 |
cggattggaacataagtaagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgtggtactccaagttcactcaaaagatttaatagccacatg |
217 |
Q |
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| T |
34296257 |
cggattggaacataagtaagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgcggtactccaagttcactcaaaagatttaatagccacatg |
34296158 |
T |
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| Q |
218 |
atttcagctgaagtattggcagcagacctgtattctgcctc |
258 |
Q |
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| T |
34296157 |
atttcagctgaagtattggcagcagacctgtattctgcctc |
34296117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 31347697 - 31347599
Alignment:
| Q |
71 |
acaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagtaagtggtgccaatattgtcacaaaaaagagtaggt |
169 |
Q |
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| T |
31347697 |
acaaagtgataatccatggcaatgtgtttcattcttgaatgaaatacgagattagaacataggtaagttgtgccaatattatcacaaaatagtgtaggt |
31347599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 24485668 - 24485908
Alignment:
| Q |
18 |
cctttgtagatatatgtgagactcgaattttaccaagttgaaccatctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaatac |
117 |
Q |
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| T |
24485668 |
cctttgtagatatatgtgagactcgaattttaccaagttgaaccttctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaatac |
24485767 |
T |
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| Q |
118 |
cggattggaacataagtaagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgtggtactccaagttcactcaaaagatttaatagccacatg |
217 |
Q |
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| T |
24485768 |
cggattggaacataagtaagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgcggtactccaagttcactcaaaagatttaatagccacatg |
24485867 |
T |
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| Q |
218 |
atttcagctgaagtattggcagcagacctgtattctgcctc |
258 |
Q |
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| T |
24485868 |
atttcagctgaagtattggcagcagacctgtattctgcctc |
24485908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 24494002 - 24494242
Alignment:
| Q |
18 |
cctttgtagatatatgtgagactcgaattttaccaagttgaaccatctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaatac |
117 |
Q |
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| T |
24494002 |
cctttgtagatatatgtgagactcgaattttaccaagttgaaccttctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaatac |
24494101 |
T |
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| Q |
118 |
cggattggaacataagtaagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgtggtactccaagttcactcaaaagatttaatagccacatg |
217 |
Q |
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| T |
24494102 |
cggattggaacataagtaagtggtgccaatattgtcacaaaaaagagtaggtgtttgatgcggtactccaagttcactcaaaagatttaatagccacatg |
24494201 |
T |
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| Q |
218 |
atttcagctgaagtattggcagcagacctgtattctgcctc |
258 |
Q |
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| T |
24494202 |
atttcagctgaagtattggcagcagacctgtattctgcctc |
24494242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 64 - 255
Target Start/End: Original strand, 58162 - 58353
Alignment:
| Q |
64 |
ctgcctcacaaaatgataatcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagtaagtggtgccaatattgtcacaaaaaaga |
163 |
Q |
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| T |
58162 |
ctgcctcacaaagtgataatcaagtgcaatgtgcttcattcttgagtgaaagaccgaattagagcataaataagttgtgccaatattgtcgcaaaaaagt |
58261 |
T |
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| Q |
164 |
gtaggtgtttgatgtggtactccaagttcactcaaaagatttaatagccacatgatttcagctgaagtattggcagcagacctgtattctgc |
255 |
Q |
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| T |
58262 |
gtaggaatttgagatggaacaccaagttctcccaaaagatttgagagccacataatttctgctgaagcgttggtagcagacctatattctgc |
58353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 38569673 - 38569621
Alignment:
| Q |
83 |
tcaagtgcaatatgcttcattctagagtgaaataccggattggaacataagta |
135 |
Q |
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| T |
38569673 |
tcaagtgcgatatgcttcattcgagagtgaaaaactggattagagcataagta |
38569621 |
T |
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