View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12851_low_12 (Length: 268)
Name: NF12851_low_12
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 42 - 258
Target Start/End: Original strand, 29070288 - 29070504
Alignment:
| Q |
42 |
atggaaactcttggtcattttcattcttgatggtttttgtttgtatgtaatgtttatttgtgcttggagcaggataaagtgcataagagaagggggaatg |
141 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29070288 |
atggaaactcgtggtcattttcattcttgatggtttttgtttgtatgtaatgtttatttgtgcttggagcaggataaagtgcataagagaagggggaatg |
29070387 |
T |
|
| Q |
142 |
aggtttacaattacaggctctggcatcttcaattcagtactgatcagtaacgtagctggcataggagacattgttggtgttaaagttaagggctcaagaa |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29070388 |
aggtttacaattacaggctctggcatcttcaattcagtactgatcagtaacgtagctggcataggagacattgttggtgttaaagttaagggttcaagaa |
29070487 |
T |
|
| Q |
242 |
ctggttggattcctatg |
258 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29070488 |
ctggttggattcctatg |
29070504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 32823969 - 32823825
Alignment:
| Q |
105 |
ttggagcaggataaagtgcataagagaagggggaatgaggtttacaattacaggctctggcatcttcaattcagtactgatcagtaacgtagctggcata |
204 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||| | | |||||| | || || ||||| ||||||| |||||| |||||||| || || |||||| |
|
|
| T |
32823969 |
ttggagcaggataaagtgcagaagggaaggtggagtccgatttacagtcaccggatctggtatcttcatttcagtgctgatcagcaatgttgctggccat |
32823870 |
T |
|
| Q |
205 |
ggagacattgttggtgttaaagttaagggctcaagaactggttgg |
249 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||| |||||| |
|
|
| T |
32823869 |
ggagacattgttgcggtgaaggttaagggctcaagaacaggttgg |
32823825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University