View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12851_low_13 (Length: 268)
Name: NF12851_low_13
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 47000739 - 47000847
Alignment:
| Q |
16 |
cacagatggtaaagaatatgaagaaagttcctggtcaaaaatgatacattaattataaggaacttattccacacttaataagcataacctacttttcaag |
115 |
Q |
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| T |
47000739 |
cacagatggtagagaatatgaagaaagttcctggtcaaaaatgatacattaattataaggaacttattccacacttaataagcataacctacttttcaag |
47000838 |
T |
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| Q |
116 |
acttcgttc |
124 |
Q |
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||||||||| |
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| T |
47000839 |
acttcgttc |
47000847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 47000880 - 47000982
Alignment:
| Q |
155 |
cttctagagggatcaaaagtaaatggaaactcatacctgctgaattccaactcatgaggaagttaaaagcatatgatacaatccaagaacacaaccagtg |
254 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47000880 |
cttctagagggatcaaaagtaaatggaaacttatacctgctgaattccaactcatgaggaagttaaaagcatatgatacaatccaagaacacaaccagtg |
47000979 |
T |
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| Q |
255 |
aac |
257 |
Q |
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||| |
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| T |
47000980 |
aac |
47000982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 47006251 - 47006318
Alignment:
| Q |
186 |
catacctgctgaattccaactcatgaggaagttaaaagcatatgatacaatccaagaacacaaccagt |
253 |
Q |
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| T |
47006251 |
catacctgttgaactccaagtcatgagaaagttaaaagcatatgatataatccaagaacacaaccagt |
47006318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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