View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12851_low_15 (Length: 237)
Name: NF12851_low_15
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_low_15 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 8241 - 8040
Alignment:
| Q |
20 |
tagacaacattcaaaacaaaacatgatagaaattagaacactaccatacaacatcatagttagttaaacatcaaaaaacaactgaaaatgcaagggaatc |
119 |
Q |
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| T |
8241 |
tagacaacattcaaaacaaaacatgatagaaattagaacactaccatacaatatcatagttagttaaacagcaaaagacaatttaaagtgcaagggaatc |
8142 |
T |
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| Q |
120 |
attcatccatgaaagaaccatcaataccctcaaaaaatggatcactgaagagcttcacttcctctgctcttcatcatcaaagttgaagagttcagatttc |
219 |
Q |
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| T |
8141 |
attcatccatgaaagaaccatcaataccctcaaaaaatggatcactgaagagcttcacttcctctgctcttcatcatcaaagttgaagagttcagatttc |
8042 |
T |
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| Q |
220 |
at |
221 |
Q |
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| T |
8041 |
at |
8040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 12026270 - 12026421
Alignment:
| Q |
20 |
tagacaacattcaaaacaaaacatgatagaaattagaacactaccatac------aacatcatagttagttaaacatcaaaaaacaactgaaaatgcaag |
113 |
Q |
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| T |
12026270 |
tagacatcattcaaaacaaaacatgatagaaattagaaccctaccataccgatacaacatcatagttagttaaacatgaaaagacaatttaaagtgcaag |
12026369 |
T |
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| Q |
114 |
ggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatcact |
165 |
Q |
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| T |
12026370 |
ggaatcattcattcatgaaagaaccatcaataccctcaaaaaatggatcact |
12026421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 18189730 - 18189679
Alignment:
| Q |
36 |
caaaacatgatagaaattagaa-cactaccatacaacatcatagttagttaa |
86 |
Q |
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| T |
18189730 |
caaaacatgatcaaaattagaatcactaccttacaacatcatagttagttaa |
18189679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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