View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12851_low_2 (Length: 478)
Name: NF12851_low_2
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 24 - 472
Target Start/End: Complemental strand, 31457554 - 31457106
Alignment:
| Q |
24 |
ctataaaaattagctctctaaaatacccagcattcaatttatgatggcttgccatctttttcacagttagacgaagttgggcacttgtgactttaacata |
123 |
Q |
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| T |
31457554 |
ctataaaaaatagctctctaaaataccccgcattcaatttgtaatggcttaccatctttttcacagttagacgaagttgggcacttgtgactttaacata |
31457455 |
T |
|
| Q |
124 |
gaccagaattatgaaattgcaagtgttaaaacgaattaaggaagtaggcttctaatgtacatgtaacataagtgtaattttgttttaatcaattcatcta |
223 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31457454 |
gaccagaattatgaaattgcaagtgttaaaaggaattaaggaagtaggctcctaatgtacatgtaacataagtgtaattttgttttaatcaattcatcta |
31457355 |
T |
|
| Q |
224 |
cttcattcatggtttgtgcccctatgtgcaggaaataggctccaatgctgaataggctattaactaattaaatcttgaaatgggtggctgcatcaatgca |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
31457354 |
cttcattcatggtttgtgcccctatgtgcaggaaataggctccaatgctgaataggctattaattaattgaatcttgaaatgggtggctgcatcaatgca |
31457255 |
T |
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| Q |
324 |
tgaagaggttacacattcatttgttgcttgaattgtcatggctgaataattactacctgttacacttcaataatgcaacgacctcttccacctctttatg |
423 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31457254 |
tgaagaggtttcacattcatttgttgcttgaattgtcatggctgaataattactacctgttacacttcaataatgcaacgacctcttccacctctttatg |
31457155 |
T |
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| Q |
424 |
ctcttgtatttgtcatcttgtcttgattgttctgcacgtcctttgcttc |
472 |
Q |
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| T |
31457154 |
ctcttgtatttgtcatcttgtcttgattgttctgcacgtccttttcttc |
31457106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 16956877 - 16956706
Alignment:
| Q |
34 |
tagctctctaaaatacccagcattcaatttatgatggcttgccatctttttcacagttagacgaagttgggcacttgtgactttaacatagaccagaatt |
133 |
Q |
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| T |
16956877 |
tagctctctaaaataccccgcattcaatttatgatggcttgccatctatttcacagttagacgaagttcagcacttgtgactttaacatagaccagaatt |
16956778 |
T |
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| Q |
134 |
atgaaattgcaagtgttaaaacgaattaaggaagtaggcttctaatgtaca--tgtaacataagtgtaatttt |
204 |
Q |
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| T |
16956777 |
atgaaattgcaagtgttaaaaccaattaaggaagtaagctcctaatgtacaattgt-acataagtgtaatttt |
16956706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 16957222 - 16957378
Alignment:
| Q |
28 |
aaaaattagctctctaaaatacccagcattcaatttatgatggcttgccatctttttcacagttagacgaagttgggcacttgtgactttaacatagacc |
127 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
16957222 |
aaaaaatagctctctaaaataccccgcattcaatttatgatggcttgccatctatttcacacttagacgaagttgggcacttgtggctttaccatagacc |
16957321 |
T |
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| Q |
128 |
agaattatgaaattgcaagtgttaaaacgaattaaggaagtaggcttctaatgtaca |
184 |
Q |
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| T |
16957322 |
agaattatgaaattgcaagtgttaaaacaaatgaaggaagtaagctcctaatgtaca |
16957378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 19460670 - 19460732
Alignment:
| Q |
309 |
ggctgcatcaatgcatgaagaggttacacattcatttgttgcttgaattgtcatggctgaata |
371 |
Q |
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| T |
19460670 |
ggcttcatcaatgcatgaagaggttacacattcatttgcttctttaattatcatggctgaata |
19460732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 19456289 - 19456222
Alignment:
| Q |
304 |
tgggtggctgcatcaatgcatgaagaggttacacattcatttgttgcttgaattgtcatggctgaata |
371 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||| | ||| ||| ||||||||||||| |
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| T |
19456289 |
tgggtggcttcatcaatgcatggagaggttacacattcatttgctcctttaataatcatggctgaata |
19456222 |
T |
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