View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12851_low_3 (Length: 415)
Name: NF12851_low_3
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_low_3 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 10255615 - 10256010
Alignment:
| Q |
20 |
tgatgtgccagggtttaatattatgcacgcgataaacgcatgggatggggaagatgatgaggaaactgtgacactaattgctccgaatgttctctccatt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10255615 |
tgatgtgccagggtttaatattatgcacgcgataaactcatgggatggggaagatgatgaggaaactgtgacactaattgctccaaatgttctctccatt |
10255714 |
T |
|
| Q |
120 |
gagcatacgatggagagacttgagctagttcatgcaatgattgagaaggtaaagataaatattaaaactgggattgtatcaagacaaccattatcggcgc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255715 |
gagcatacgatggagagacttgagctagttcatgcaatgattgagaaggtaaagataaatattaaaactgggattgtatcaagacaaccattatcggcgc |
10255814 |
T |
|
| Q |
220 |
gaaacctggatttcgcggtgataaatggtgattatatggggaagaagaataggtttgtttatgcggcaattgggaatccaatgccgaagatttctggcgt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10255815 |
gaaacctggatttcgcggtgataaatggtgattatatggggaagaagaataggtttgtttatgcggcaattgggaatccaatgccgaagatttctggggt |
10255914 |
T |
|
| Q |
320 |
ggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggcgagggagga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255915 |
ggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagagggttgttatggtggtgagccgtttttcgtggcgagggagga |
10256010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 10238990 - 10238601
Alignment:
| Q |
20 |
tgatgtgccagggtttaatattatgcacgcgataaacgcatgggatggggaagatgatgaggaaactgtgacactaattgctccgaatgttctctccatt |
119 |
Q |
| |
|
|||||| || ||| ||||||||||||| ||||||||||||||||| |||||||| | |||| |||||| || |||| |||||| |||||| | | |
|
|
| T |
10238990 |
tgatgttcctgggcttaatattatgcatttgataaacgcatgggatgaggaagatgg---gaaaacagtgacaatagttgcaccgaatattctctgcgtg |
10238894 |
T |
|
| Q |
120 |
gagcatacgatggagagacttgagctagttcatgcaatgattgagaaggtaaagataaatattaaaactgggattgtatcaagacaaccattatcggcgc |
219 |
Q |
| |
|
||||||| |||||||||| | ||||| |||||| |||||||||||| || | || || | |||| ||||| ||| |||||||||| ||||| || |
|
|
| T |
10238893 |
gagcatatgatggagagattggagcttattcatgaaatgattgagaaagtgagaattaacgtcgaaacggggatagtaacaagacaaccgttatcagcaa |
10238794 |
T |
|
| Q |
220 |
gaaacctggatttcgcggtgataaatggtgattatatggggaagaagaataggtttgtttatgcggcaattgggaatccaatgccgaagatttctggcgt |
319 |
Q |
| |
|
|||| || ||||| || |||||||| ||| | | |||||||||| | |||||| |||| ||||| ||||||||||||||||||||| |||| || || |
|
|
| T |
10238793 |
gaaatcttgatttggcagtgataaacaatgagtttttggggaagaaacacaggtttatttacgcggcgattgggaatccaatgccgaagttttcgggggt |
10238694 |
T |
|
| Q |
320 |
ggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggcgaggga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10238693 |
ggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggctaggga |
10238601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 10230210 - 10229825
Alignment:
| Q |
20 |
tgatgtgccagggtttaatattatgcacgcgataaacgcatgggatggggaagatgatgaggaaactgtgacactaattgctccgaatgttctctccatt |
119 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||| |||||||| || ||| |||||| | | || ||||| || | || | |
|
|
| T |
10230210 |
tgatgttccagggtttaatattatgcatacgataaacgcatgggatgaggaagatgg---gggaacagtgacattggtagcaacgaatattttgtcagtg |
10230114 |
T |
|
| Q |
120 |
gagcatacgatggagagacttgagctagttcatgcaatgattgagaaggtaaagataaatattaaaactgggattgtatcaagacaaccattatcggcgc |
219 |
Q |
| |
|
||||| |||||||||| | || || ||||||| ||||||||||| || | ||| ||| | |||| ||| | ||| |||||||||||||||| || |
|
|
| T |
10230113 |
cagcatgtgatggagagaatggaccttattcatgccatgattgagaaagtgaggattaatgtcgaaacggggttagtaacaagacaaccattatcagcaa |
10230014 |
T |
|
| Q |
220 |
gaaacctggatttcgcggtgataaatggtgattatatggggaagaagaataggtttgtttatgcggcaattgggaatccaatgccgaagatttctggcgt |
319 |
Q |
| |
|
|||| || ||||| || |||||||| ||||| | |||||||||||| ||||||||||||||| || ||||||||||||||||| ||| |||| || || |
|
|
| T |
10230013 |
gaaatcttgatttggcagtgataaacaatgattttttggggaagaagagtaggtttgtttatgcagcgattgggaatccaatgccaaagttttcgggggt |
10229914 |
T |
|
| Q |
320 |
ggtgaagatagatgtgttgaaaggggaggaagttgggtgtaggttgtatggagaggattgttatggtggtgagccgtttttcgtggcga |
408 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10229913 |
ggtgaagattgatgtgttgaaaggggaggaagttggatgtaggttgtatggagagggttgttatggtggtgagccgtttttcgtggcga |
10229825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University