View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12851_low_5 (Length: 398)
Name: NF12851_low_5
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 47001379 - 47001018
Alignment:
| Q |
20 |
aagtcgaggagtgccannnnnnnataaactttctctattttaaatgtggaacttgagtttttcctactaatactttctctgatttttcaccgaccttaca |
119 |
Q |
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| T |
47001379 |
aagtcgaggagtgccatttttttataaactttctc-attttaaatgtgaaacttgagtttttcctactaatactttctctgatttttcaccgaccttaca |
47001281 |
T |
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| Q |
120 |
tttgcattcatgaaatagatttggtttaagaataccgcgatggcagtaaagttaaaaggtatatggtaatattcattttcaccatttagttaccataata |
219 |
Q |
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| T |
47001280 |
ttagcattcatgaaatagatttggtttaagaataccgcgatggtagtaaagttaaaaggtatatggtaatattcattttcaccatttagttaccataata |
47001181 |
T |
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| Q |
220 |
atcaggtatatacaggatctttctcacttggcatgggaggaataccctggattataatgtctgaggtaatatgcttcactgcgtatgcaaattttgatcg |
319 |
Q |
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| T |
47001180 |
atcaggtatatacaggatctttctcacttggcatgggaggaataccctgggttataatgtctgaggtaatatgcttcactgcgtatgcaaattttgatcg |
47001081 |
T |
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| Q |
320 |
taagttcataacaagtcctcatcttgactagataatcannnnnnnaccagatatttcccatca |
382 |
Q |
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| T |
47001080 |
taagttcataacaagtcctcatcttgactagataatcatttttttaccagatatttcccatca |
47001018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 47006540 - 47006474
Alignment:
| Q |
221 |
tcaggtatatacaggatctttctcacttggcatgggaggaataccctggattataatgtctgaggta |
287 |
Q |
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| T |
47006540 |
tcaggtatatgttggatcttactcgctaggcatgggagcaattccctgggttataatgtctgaggta |
47006474 |
T |
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