View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12851_low_6 (Length: 344)
Name: NF12851_low_6
Description: NF12851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12851_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 22073927 - 22073616
Alignment:
| Q |
20 |
attaacacacgaacttctaaagtcaaaccaaaactcaaagtcattaaacctattaatttgaatgaaacagtgcttcaacatgaaaatgcagcagcaggaa |
119 |
Q |
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| T |
22073927 |
attaacacaccaatttctaaagtcaaaccaaaactcaaagtcattaaacctattaattttaatgaaacagtgcttcaacatgaaaatgcagcagcaggaa |
22073828 |
T |
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| Q |
120 |
gagaaaacaggaaaagaattctctaccaaagtaaggcacttgctgcatccaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttga |
219 |
Q |
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| T |
22073827 |
gagaaaacaggaaaagaattctctaccaaagtaaggcacttgctgcatcaaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttaa |
22073728 |
T |
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| Q |
220 |
tggaagcagaatccaaccagaggtcgcggttctaagcagagaaaaaagaaatataattattcaaaataacaagttacatgtgccattaacaggtcatgcc |
319 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| | ||||||||||||||| |||||||||||||||||||||| |
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| T |
22073727 |
tggaagcagaatccaaccagaggtcgcagttctaagcagagaaaaaagaaaaagaattttgcaaaataacaagttagatgtgccattaacaggtcatgct |
22073628 |
T |
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| Q |
320 |
gaatcttcatct |
331 |
Q |
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|||||||||||| |
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| T |
22073627 |
gaatcttcatct |
22073616 |
T |
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