View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12852_high_5 (Length: 268)
Name: NF12852_high_5
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12852_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 40283781 - 40283530
Alignment:
| Q |
1 |
tacgacctaaaggaccaatttaaaactaaaaggactaatcagatacaaacgttaaacttaaagaaacctaggatgcatttggtatgttatttactattga |
100 |
Q |
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| T |
40283781 |
tacgacctaaaggaccaatttaaaactaaaaggactaatcagatacaaacgtcaaacttaaagaaacctaggatgcatttggtatgttatttactattga |
40283682 |
T |
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| Q |
101 |
gcacattttcgcttgtagattgacatactctcgatgattcctattgatacatcgggagtttgaagggaggtgttagataatatgctattgcacttaggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40283681 |
gcacattttcgcttgtagattgacatactctcgatgattcctattgatacatcgggagtttgaagggaggtgttagataatatgctattgcacttaggtt |
40283582 |
T |
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| Q |
201 |
gttggcccttttatatgtataagttagtagtctagtccttttagcttttgat |
252 |
Q |
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| T |
40283581 |
gttggcccttttatatttataagttagtagtctagtccttttagcttttgat |
40283530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 25576296 - 25576370
Alignment:
| Q |
8 |
taaaggaccaatttaaaactaaaaggactaatcagatacaaacgttaaacttaaagaaacctaggatgcatttgg |
82 |
Q |
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| T |
25576296 |
taaaggactaatttgaaactaaaacgactaatccggtacaaacgttaaacttaaaggaccccaggatgcaattgg |
25576370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 15089027 - 15088954
Alignment:
| Q |
8 |
taaaggaccaatttaaaactaaaaggactaatcagatacaaacgttaaacttaaagaaacctaggatgcatttg |
81 |
Q |
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| T |
15089027 |
taaaggaccaatttgaaactaaaagggctaatctgatagaaacgtcaaacttaaaggaccccgggatgcatttg |
15088954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 34366873 - 34366815
Alignment:
| Q |
22 |
aaaactaaaaggactaatcagatacaaacgttaaacttaaagaaacctaggatgcattt |
80 |
Q |
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||||||||||||||||||| | ||||||| || ||||||||| | || ||||||||||| |
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| T |
34366873 |
aaaactaaaaggactaatccggtacaaacattcaacttaaaggaccccaggatgcattt |
34366815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 4249315 - 4249355
Alignment:
| Q |
22 |
aaaactaaaaggactaatcagatacaaacgttaaacttaaa |
62 |
Q |
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| T |
4249315 |
aaaactaaaaggattaatctgatacaaactttaaacttaaa |
4249355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 10099822 - 10099862
Alignment:
| Q |
24 |
aactaaaaggactaatcagatacaaacgttaaacttaaaga |
64 |
Q |
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| T |
10099822 |
aactaaaaggacaaattcgatacaaacgttaaacttaaaga |
10099862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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