View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12852_low_1 (Length: 603)
Name: NF12852_low_1
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12852_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 23 - 573
Target Start/End: Original strand, 42995395 - 42995945
Alignment:
| Q |
23 |
aacatgaggaaggactacccacatcttcgacgacatactcaactatgtatgtcttgtacttcattcgtaacttgttgacaaccttctctatctcacaaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
42995395 |
aacatgaggaaggactacccacatcttcgacgacatactcaaatatgtatgtcttgtacttcattcgtaacttgttgatagccttctctatctcacaaat |
42995494 |
T |
|
| Q |
123 |
aggattattcatcaaaggacctatcacataaattaacacaaacatgttagtgacaaatgaaaaccaagcctcatcaaggctcttagtgtttaatgaagtg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42995495 |
aggattattcatcaaaggacctatcacataaattaacacaaacatgttagtgacaaatgaaaaccaagcctcatcaagcctcttagtgtttaatgaagtg |
42995594 |
T |
|
| Q |
223 |
ctgctagaggcagctttgtctgtcgcagcattatgtttcttcacgatttcaatatcagcactggcacggcgagcggcgttgacagtttataaccttccca |
322 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
42995595 |
ctgctagaagcagctttgtctgtcgcagcattatgtttcttcacggtttcgatatcggcaccggcacggcgagcggcgttgacaatatataaacttccca |
42995694 |
T |
|
| Q |
323 |
aacctgtctttcaaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtataccataaaaatctctcagagccttta |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42995695 |
aacctgtctttcaaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtatgccataaaaatctctcagagccttcc |
42995794 |
T |
|
| Q |
423 |
atcattagaaagnnnnnnncagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaataaagtggcataacgggtaatctcatc |
522 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
42995795 |
atccttagaaagaaaaaaacagcaccgtttactctctcaactaagacttcaaactagttgtcttttgtatcaataaagtggcatagcgggaaatctcatc |
42995894 |
T |
|
| Q |
523 |
cccaaagtcagctgtaaagaggttagataacctcacaacaccctacagaaa |
573 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42995895 |
cccaaagtcagttgtaaagaggttaggtaacctcacaacaccctacagaaa |
42995945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 31042706 - 31042652
Alignment:
| Q |
202 |
ctcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattat |
256 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
31042706 |
ctcttagtgttcaatgaagtgctgctagatgcagctttgtttgttgcagcattat |
31042652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 203 - 578
Target Start/End: Original strand, 27354341 - 27354717
Alignment:
| Q |
203 |
tcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattatgtttcttcacgatttcaatatcagcactggcacggcgagcggcgtt |
302 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
27354341 |
tcttagtgtttaatgaagtgttgttagaggcagctttgtctgtcgcaacattatgtttcttcacggtttcaatatcggcaccggcacggcgagcggcgtt |
27354440 |
T |
|
| Q |
303 |
gacagtttataaccttcccaaacctgtctttcaaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtataccata |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27354441 |
gacagtttataaccttcccaaacctgtctttcaaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtattccata |
27354540 |
T |
|
| Q |
403 |
aaaatctctcagagcctttaatcattagaaag-nnnnnnncagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaataaagt |
501 |
Q |
| |
|
||||||||||||||| || ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27354541 |
aaaatctctcagagctttccatccttagaaagaaaaaaaacagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaataaagt |
27354640 |
T |
|
| Q |
502 |
ggcataacgggtaatctcatccccaaagtcagctgtaaagaggttagataacctcacaacaccctacagaaagaaaa |
578 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
27354641 |
ggcatagcgggtaatctcatccccaaagtcagctgtaaagaggttaggtaacctcacaacaccctacagaaaaaaaa |
27354717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 35378168 - 35378233
Alignment:
| Q |
191 |
cctcatcaaggctcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattat |
256 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35378168 |
cctcatcaagcctcttagtgttcaatgaagtgctgctagaggcagctttgtttgtcgcagcattat |
35378233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 311 - 567
Target Start/End: Complemental strand, 16982037 - 16981781
Alignment:
| Q |
311 |
ataaccttcccaaacctgtctttcaaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtataccataaaaatctc |
410 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| || ||||| ||||||| |
|
|
| T |
16982037 |
ataaccttcccaaacatgtccttcaaaaccattgcaaatttccccaaaccaacaaacatcagggtgatccatgctccaagtcgaatcccatagaaatctc |
16981938 |
T |
|
| Q |
411 |
tcagagcctt-taatcattagaaagnnnnnnncagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaat-aaagtggcataa |
508 |
Q |
| |
|
| |||||||| | | ||||||| ||||||| | | | ||||| |||| |||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
16981937 |
tgagagccttctgtcccttagaaaaaaaaaat--tcaccgttaattttttcaaccaagatttcaaactggttctcttttgtatcaatcaaagtggcatat |
16981840 |
T |
|
| Q |
509 |
cgggtaatctcatccccaaagtcagctgtaaagaggttagataacctcacaacacccta |
567 |
Q |
| |
|
| ||| |||||||| |||||||||||| ||||||||| | ||| |||||||||||||| |
|
|
| T |
16981839 |
caggtgatctcatctccaaagtcagctccaaagaggtttggtaatctcacaacacccta |
16981781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 48846172 - 48846286
Alignment:
| Q |
191 |
cctcatcaaggctcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattatgtttcttcacgatttcaatatcagcactggcacg |
290 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| || |||||||| | ||| ||||| |||| ||||| |
|
|
| T |
48846172 |
cctcatcaagcctcttagtgttcaatgaagtgctgctagaggaagctttgtttgtcgcaacatcat-tttcttcatggttttgatatcggcaccagcacg |
48846270 |
T |
|
| Q |
291 |
gcgagcggcgttgaca |
306 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
48846271 |
gcgagcggcattgaca |
48846286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 569
Target Start/End: Original strand, 21005484 - 21005609
Alignment:
| Q |
445 |
caccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaat-aaagtggcataacgggtaatctcatccccaaagtcagctgtaaagag |
543 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||| || || || |||||| | ||| |||||||||||||||||||| | | ||| || |
|
|
| T |
21005484 |
caccatttactctctcaactaagacttcaaactggttttcttttgtgtctatcaaggtggcaaagcggctaatctcatccccaaagtcaacagaaaatag |
21005583 |
T |
|
| Q |
544 |
gttagataacctcacaacaccctaca |
569 |
Q |
| |
|
||||| ||||| ||| | ||||||| |
|
|
| T |
21005584 |
gttaggcaacctaacagcgccctaca |
21005609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 21005352 - 21005390
Alignment:
| Q |
311 |
ataaccttcccaaacctgtctttcaaaaccattgcaaat |
349 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
21005352 |
ataaccttcccaaatctgtctttcaaaaccatagcaaat |
21005390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 193 - 306
Target Start/End: Complemental strand, 7016344 - 7016232
Alignment:
| Q |
193 |
tcatcaaggctcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattatgtttcttcacgatttcaatatcagcactggcacggc |
292 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| || |||||||| | ||| ||||| |||| ||||| || |
|
|
| T |
7016344 |
tcatcaagcctcttagtgttcaatgaagtgctgctagaggaagctttgtttgtcgcaacatcat-tttcttcatggttttgatatcggcaccggcaccgc |
7016246 |
T |
|
| Q |
293 |
gagcggcgttgaca |
306 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
7016245 |
gagcagcattgaca |
7016232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University