View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12852_low_10 (Length: 232)
Name: NF12852_low_10
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12852_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 54916624 - 54916839
Alignment:
| Q |
1 |
gattgtaaaactcacctgtcaaaaaacagtaagtgtgcaaccgccaatgacagaaagcacggtttcttaaaatccagccatgagataaatggagtctcaa |
100 |
Q |
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| T |
54916624 |
gattgtaaaactcacctgtcaaaaaacagtaagtgtgcaaccgccaatgacagaaagcacggtttcttaaaatccagccataagataaatggagtctcaa |
54916723 |
T |
|
| Q |
101 |
tttagcaaaataaatccctcaaacatagcatatacacgagatgtatgacatagacctacatatatctttggtgtatctacacatgccatctaaaaaagtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54916724 |
tttagcaaaataaatccctcaaacatagcatatacacgagatgtatgacatagacctacatatatctttggtgtatctacacataccatctaaaaaagtt |
54916823 |
T |
|
| Q |
201 |
cactatcaatgcttca |
216 |
Q |
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|||||||||||||||| |
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| T |
54916824 |
cactatcaatgcttca |
54916839 |
T |
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