View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12852_low_11 (Length: 229)
Name: NF12852_low_11
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12852_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 40585121 - 40584921
Alignment:
| Q |
15 |
cagagaagaggaacaaacaaaa-taaaatctccaggaatatattgtcacatcactttatattaagaattcaaatttcttttttgaagggagtatattaag |
113 |
Q |
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| T |
40585121 |
cagagaagaggaacaaacaaaaataaaatctccaggaatatattgtcacatcactttatattaagaattcaaatttcttttttgaagggagcatattaag |
40585022 |
T |
|
| Q |
114 |
aattcatgatgcttactagaaatgtttatctaatctattgttaaggatgactggtttcagcaaacaacgtgagctttatgtgtataataattcacctaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40585021 |
aattcatgatgcttactagaaatgtttatctaatctattgttaaggatgactggtttctgcaaacaacgtgagctttatgtgtataataattcacctaat |
40584922 |
T |
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| Q |
214 |
t |
214 |
Q |
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| T |
40584921 |
t |
40584921 |
T |
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