View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12852_low_13 (Length: 225)

Name: NF12852_low_13
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12852_low_13
NF12852_low_13
[»] scaffold1652 (3 HSPs)
scaffold1652 (16-210)||(357-548)
scaffold1652 (160-210)||(198-248)
scaffold1652 (158-210)||(279-331)
[»] scaffold0902 (2 HSPs)
scaffold0902 (16-210)||(3321-3518)
scaffold0902 (8-48)||(3496-3536)
[»] chr6 (7 HSPs)
chr6 (16-167)||(14254072-14254223)
chr6 (7-210)||(14316791-14316991)
chr6 (16-128)||(14248265-14248380)
chr6 (157-204)||(14248376-14248423)
chr6 (72-133)||(14351555-14351616)
chr6 (158-202)||(14248455-14248499)
chr6 (158-210)||(14317017-14317069)
[»] scaffold1176 (3 HSPs)
scaffold1176 (16-210)||(138-329)
scaffold1176 (16-177)||(1288-1448)
scaffold1176 (158-202)||(68-112)
[»] chr4 (4 HSPs)
chr4 (63-210)||(37245022-37245166)
chr4 (8-204)||(37241938-37242143)
chr4 (63-171)||(37253104-37253209)
chr4 (63-171)||(37232855-37232960)
[»] scaffold1801 (1 HSPs)
scaffold1801 (16-135)||(94-216)
[»] scaffold0002 (2 HSPs)
scaffold0002 (157-204)||(165303-165350)
scaffold0002 (158-202)||(165227-165271)


Alignment Details
Target: scaffold1652 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 548 - 357
Alignment:
Q  16 agagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttc 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548 agagatcgccgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttc 449  T
Q  116 acaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatgg 210  Q
    ||||||||||||||||||||     |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| ||||| |||||    
T  448 acaggtacgggagcagatgc---caccgttgagttagcggagggagaaatcgcaggctatggtgcttgagatggaggagtagatatcgacgatgg 357  T

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Target: scaffold1652; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 248 - 198
Alignment:
Q  160 agaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatgg 210  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||| |||||    
T  248 agaaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatgg 198  T

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Target: scaffold1652; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 331 - 279
Alignment:
Q  158 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatgg 210  Q
    |||||||||| |||||||||| ||||||||||| | ||||||||||| |||||    
T  331 ggagaaatcgtaggcgatggtgcttgagatggaggggtagagatcgacgatgg 279  T

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Target: scaffold0902 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 3321 - 3518
Alignment:
Q  16 agagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgagg---agatggtggagagttgatggcagacggtgaaggagaaggactgctc 112  Q
    |||||||| |||||||||||| ||||||| |||||| |||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  3321 agagatcgccgatggagtaatggcaggagcggctgctggggaagcatgaggaggagatggtggagagttgatggcagacggtgaaggagaaggactgctc 3420  T
Q  113 ttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatgg 210  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  3421 ttcacaggtacgggagcagatatagatgccattgagttagcggagggagaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatgg 3518  T

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Target: scaffold0902; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 3496 - 3536
Alignment:
Q  8 ggaggagcagagatcgacgatggagtaatagcaggagtggc 48  Q
    ||||||| |||||||||||||||||| | ||||||||||||    
T  3496 ggaggagtagagatcgacgatggagtcacagcaggagtggc 3536  T

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Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 14254072 - 14254223
Alignment:
Q  16 agagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttc 115  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14254072 agagatcgacgatggagtaatagcaggagtagctgcaggtgaagcttgaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttc 14254171  T
Q  116 acaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcg 167  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  14254172 acaggtacgggagcagatgaagatgccgttgagctagcggagggagaaatcg 14254223  T

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Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 14316791 - 14316991
Alignment:
Q  7 aggaggagcagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggag---atggtggagagttgatggcagacggtgaaggagaa 103  Q
    |||||| | ||||||||| |||||||| || || ||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||  ||||    
T  14316791 aggaggggtagagatcgatgatggagtgatggccggagtggctgcgggggaagcttgaggaggagatgatggagagttgatggcagacggtgaaatagaa 14316890  T
Q  104 ggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtccttgagatggaagagtagagatcg 203  Q
    ||||||||||||||||||||||||      |||||||| ||||||||||| || || |||||||||||||| ||| ||||||| ||| ||||||||||||    
T  14316891 ggactgctcttcacaggtacggga------gcagatgctgttgagttagctgatggggaaatcgcaggcgagggtgcttgagacggaggagtagagatcg 14316984  T
Q  204 atgatgg 210  Q
    |||||||    
T  14316985 atgatgg 14316991  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 14248265 - 14248380
Alignment:
Q  16 agagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggag---atggtggagagttgatggcagacggtgaaggagaaggactgctc 112  Q
    |||||||| |||||||||||| |||||||||||||||||| ||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||    
T  14248265 agagatcgccgatggagtaattgcaggagtggctgcggggaaagcttgaggaggagatgatggagagttgatggcagacggtgaaggagaaggactgctc 14248364  T
Q  113 ttcacaggtacgggag 128  Q
    |||||||||| |||||    
T  14248365 ttcacaggtatgggag 14248380  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 14248376 - 14248423
Alignment:
Q  157 gggagaaatcgcaggcgatggtccttgagatggaagagtagagatcga 204  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  14248376 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcga 14248423  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 14351555 - 14351616
Alignment:
Q  72 gtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagat 133  Q
    |||||||||||||||  || | ||||||||||||||| ||||| ||||||| ||||| ||||    
T  14351555 gtggagagttgatggtggatgatgaaggagaaggactactctttacaggtatgggagaagat 14351616  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 14248455 - 14248499
Alignment:
Q  158 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatc 202  Q
    |||||||| | |||||||||||||||||||||| | |||||||||    
T  14248455 ggagaaatagtaggcgatggtccttgagatggaggggtagagatc 14248499  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 14317017 - 14317069
Alignment:
Q  158 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatgg 210  Q
    |||||||| | |||||||||||||||||||||  | ||||||||| |||||||    
T  14317017 ggagaaatagtaggcgatggtccttgagatggtggggtagagatccatgatgg 14317069  T

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Target: scaffold1176 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 329 - 138
Alignment:
Q  16 agagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttc 115  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  329 agagatggacgatggagtaatagcaggggtggctgcgggggaagcttgaggagatggtctagagttgatggcagatggtgaaggagaaggactgctcttc 230  T
Q  116 acaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatgg 210  Q
    |||||| | |||||||| ||    || ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  229 acaggttcaggagcagacgc---cgcggttgagttagctgagggagaaatcgcaggcgatggtgcttgagatggaggagtagagatcgatgatgg 138  T

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Target: scaffold1176; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 1448 - 1288
Alignment:
Q  16 agagatcgacgatggagtaatagcaggagtggctgcgggggaagctt---gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctc 112  Q
    |||||| ||||||| |||| |||| ||||  | |||||||||||| |   |||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  1448 agagattgacgatg-agtattagccggagctgttgcgggggaagcatgaggaggagatggtggacagttgatggcacacggtgaaggagaaggactgctc 1350  T
Q  113 ttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatgg 177  Q
    |||||||||||  ||||| ||||    |||||||||||||| ||||||||||||||||| |||||    
T  1349 ttcacaggtacacgagcatatgc---cgccgttgagttagctgagggagaaatcgcaggagatgg 1288  T

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Target: scaffold1176; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 112 - 68
Alignment:
Q  158 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatc 202  Q
    |||||||| | |||||||||||||||||||||| | |||||||||    
T  112 ggagaaatagtaggcgatggtccttgagatggaggggtagagatc 68  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 37245022 - 37245166
Alignment:
Q  63 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggaga 162  Q
    |||||||||||||||||||| |||  |||||||| ||||||||| |||||||| |||| |||||||||||||| |   ||||||||||||||||||||||    
T  37245022 gaggagatggtggagagttgttggtggacggtgatggagaaggaatgctcttcgcaggcacgggagcagatgccg---ccgttgagttagcggagggaga 37245118  T
Q  163 aatcgcaggcgatggtccttgagatggaagagtagagatcgatgatgg 210  Q
    |||||| || |||||| ||||||||||| ||||||||||||| |||||    
T  37245119 aatcgctggtgatggtgcttgagatggaggagtagagatcgacgatgg 37245166  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 37241938 - 37242143
Alignment:
Q  8 ggaggagcagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgagg------agatggtggagagttgatggcagacggtgaaggag 101  Q
    ||||||| |||||| |||||||||||||||||||||| ||| || ||||| || |||||      ||||||||||||||||||||| |||||||||||||    
T  37241938 ggaggagtagagattgacgatggagtaatagcaggagcggcagcaggggaggcgtgaggaggaggagatggtggagagttgatggcggacggtgaaggag 37242037  T
Q  102 aaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagc------ggagggagaaatcgcaggcgatggtccttgagatggaagagt 195  Q
    ||||||||||| | ||||||||||||| ||||||     ||| |||||||||      |||||||| ||||||||| |||||| ||||||||||| ||||    
T  37242038 aaggactgctcgttacaggtacgggagaagatgc---caccggtgagttagcgctggtggagggagcaatcgcaggtgatggtgcttgagatggaggagt 37242134  T
Q  196 agagatcga 204  Q
     ||||||||    
T  37242135 tgagatcga 37242143  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 37253104 - 37253209
Alignment:
Q  63 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggaga 162  Q
    ||||||||||||||||||||||||| || ||||||||||| |||  | |||||||||||| ||||||||||||    |||| ||||| ||||||||||||    
T  37253104 gaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtatgggagcagatgc---cgccggtgagtcagcggagggaga 37253200  T
Q  163 aatcgcagg 171  Q
     ||||||||    
T  37253201 gatcgcagg 37253209  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 37232855 - 37232960
Alignment:
Q  63 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggaga 162  Q
    ||||||||||||||||||||||||| || || |||||||| |||    ||||||||||| |||||| |||||||   |||| ||||| ||||||||||||    
T  37232855 gaggagatggtggagagttgatggcggatggcgaaggagatggagaattcttcacaggtgcgggaggagatgca---gccggtgagtgagcggagggaga 37232951  T
Q  163 aatcgcagg 171  Q
     ||||||||    
T  37232952 gatcgcagg 37232960  T

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Target: scaffold1801 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 216 - 94
Alignment:
Q  16 agagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggag---atggtggagagttgatggcagacggtgaaggagaaggactgctc 112  Q
    ||||||||||||||||||||| |||||||  ||||| || ||||| |||||||   || |||||||||||||||||||||||||||||||||||||||||    
T  216 agagatcgacgatggagtaatggcaggagcagctgctggcgaagcatgaggaggagattgtggagagttgatggcagacggtgaaggagaaggactgctc 117  T
Q  113 ttcacaggtacgggagcagatgc 135  Q
    |||||||| || |||||||||||    
T  116 ttcacaggaacaggagcagatgc 94  T

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Target: scaffold0002 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 165350 - 165303
Alignment:
Q  157 gggagaaatcgcaggcgatggtccttgagatggaagagtagagatcga 204  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  165350 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcga 165303  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 165271 - 165227
Alignment:
Q  158 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatc 202  Q
    |||||||| | |||||||||||||||||||||| | |||||||||    
T  165271 ggagaaatagtaggcgatggtccttgagatggaggggtagagatc 165227  T

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