View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12852_low_14 (Length: 213)
Name: NF12852_low_14
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12852_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 3794477 - 3794274
Alignment:
| Q |
9 |
gagagagaagaaaagagaaagaggaattgtttttcttggaacaatgaag----------acgcaggtaaatatattataaaaggtgccaaggccatggcc |
98 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
3794477 |
gagaaagaagaaaagagaaagaggaattgtttttcttggaacaatgaagggctgaaggcacgcaggtaaatatattataaaaggtgccaaggccatagcg |
3794378 |
T |
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| Q |
99 |
aggagctgcccctggctaaatgtagggagcagtcaacggtctaggcatggcaaactttgcaggagaaaggtctaatctctatttgcttttgtagtggtga |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3794377 |
aggagctgcccctggctaaatgtagggagcagtcaacggtccagacatggcaggctttgcaggagaaaggtctaatctctatttgcttttgcagtggtga |
3794278 |
T |
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| Q |
199 |
tgtc |
202 |
Q |
| |
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|||| |
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| T |
3794277 |
tgtc |
3794274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 7783195 - 7783331
Alignment:
| Q |
66 |
aaatatattataaaaggtgccaaggccatggccaggagctgcccctggctaaatgtagggagcagtcaacggtctaggcatggcaaactttgcaggagaa |
165 |
Q |
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||||||| |||||||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||| | |||||||| | ||||||||||||| |
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| T |
7783195 |
aaatatagtataaaagatgccaaggccaaagccaagagctgcccctggctaaatttagggagcagtcaacgttgcaggcatggtaggctttgcaggagaa |
7783294 |
T |
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| Q |
166 |
aggtctaatctctatttgcttttgtagtggtgatgtc |
202 |
Q |
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| T |
7783295 |
tgatctaatctccatttgcttttgcagtggtgatgtc |
7783331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 6660765 - 6660967
Alignment:
| Q |
10 |
agagagaagaaaagagaaagaggaattgtttttcttggaacaatgaag----------acgcaggtaaatatattataaaaggtgccaaggccatggcca |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
6660765 |
agagagaagaaaagagaaagaggaattgtttttcttggaacaatgaagggctgaaggcacgcaggtaaatatattataaaaggtgtcaaggccatagcca |
6660864 |
T |
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| Q |
100 |
ggagctgcccctggctaaatgtagggagcagtcaacggtctaggcatggcaaactttgcaggagaaaggtctaatctctatttgcttttgtagtggtgat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
6660865 |
ggagctgcccctggctaaatgtagggagcagtcaacagtccagacatggcaggctttgcaagagaaaggtctaatctctatttgcttttgcagtggtgat |
6660964 |
T |
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| Q |
200 |
gtc |
202 |
Q |
| |
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||| |
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| T |
6660965 |
gtc |
6660967 |
T |
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