View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12852_low_2 (Length: 366)
Name: NF12852_low_2
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12852_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 6418526 - 6418197
Alignment:
| Q |
1 |
actaacgtgagaccaaattgcaaataaatataatgtgttaacgttcaccatagccaaacaagaaatatcttcattaaacaagaaatnnnnnnnnttgtta |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6418526 |
actaacgtgaaaccaaattgcaaataaatagaatgtgtgaacgttcaccatagccaaacaagaaatatcttcattaaacaagaaataaaaaaaattgtta |
6418427 |
T |
|
| Q |
101 |
tattaagtaaaccaagatatgcttgaaactatctaatttaaattatcctgcacttgaagcttcaaaaatgatatacacgagtattttctttaatggacca |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6418426 |
tattaggtaaaccaagatatgcttgaaactatctaatttaaattatcctgcacttgaagcttaaaaaatgatatacacgagtattttctttaatggacca |
6418327 |
T |
|
| Q |
201 |
aacaactcatcactg-----tcgtaggtgaacttaaaaactgcattggaannnnnnnaaaggattttgaaactattctttctttataatgctctaccnnn |
295 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6418326 |
aacaactcatcactgatgatatgtaggtgaacttaaaaaatgcattggaatttttttaaaggattttgaaactattctttctttataatgctctaccaaa |
6418227 |
T |
|
| Q |
296 |
nnnntaaagaaaatatcacttaatactaca |
325 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6418226 |
aaaataaagaaaatatcacttaatactaca |
6418197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University