View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12852_low_3 (Length: 332)

Name: NF12852_low_3
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12852_low_3
NF12852_low_3
[»] chr4 (9 HSPs)
chr4 (62-200)||(8347945-8348083)
chr4 (92-204)||(8348679-8348791)
chr4 (251-315)||(52398964-52399028)
chr4 (138-200)||(50464543-50464605)
chr4 (146-198)||(56303733-56303785)
chr4 (142-200)||(39819403-39819461)
chr4 (146-195)||(30937972-30938021)
chr4 (201-236)||(49489237-49489272)
chr4 (141-207)||(56304379-56304444)
[»] chr6 (6 HSPs)
chr6 (62-194)||(2296414-2296546)
chr6 (138-194)||(22721926-22721982)
chr6 (152-194)||(9956057-9956099)
chr6 (140-198)||(30322383-30322441)
chr6 (152-195)||(18100536-18100579)
chr6 (151-200)||(15294654-15294703)
[»] chr1 (8 HSPs)
chr1 (78-200)||(47895423-47895545)
chr1 (138-207)||(37403278-37403347)
chr1 (139-195)||(29406805-29406861)
chr1 (154-200)||(21783286-21783332)
chr1 (152-200)||(34083179-34083227)
chr1 (130-200)||(27789364-27789434)
chr1 (143-205)||(38194249-38194311)
chr1 (148-193)||(45528395-45528439)
[»] scaffold0517 (1 HSPs)
scaffold0517 (138-207)||(4729-4798)
[»] chr3 (9 HSPs)
chr3 (152-200)||(35652225-35652273)
chr3 (139-199)||(40935908-40935968)
chr3 (153-195)||(7565330-7565372)
chr3 (153-195)||(22980020-22980062)
chr3 (201-235)||(32834370-32834404)
chr3 (142-198)||(2779710-2779766)
chr3 (158-206)||(23709524-23709572)
chr3 (158-206)||(23727980-23728028)
chr3 (158-206)||(23746436-23746484)
[»] scaffold0059 (1 HSPs)
scaffold0059 (141-200)||(8927-8986)
[»] scaffold0013 (1 HSPs)
scaffold0013 (141-200)||(236412-236471)
[»] chr8 (10 HSPs)
chr8 (130-200)||(42757396-42757466)
chr8 (130-207)||(12296133-12296210)
chr8 (148-195)||(29702535-29702582)
chr8 (148-195)||(35020886-35020933)
chr8 (148-198)||(8744249-8744299)
chr8 (130-200)||(12300205-12300275)
chr8 (141-207)||(21348345-21348411)
chr8 (150-187)||(35751651-35751688)
chr8 (138-199)||(37810321-37810382)
chr8 (160-200)||(1274524-1274564)
[»] chr7 (6 HSPs)
chr7 (142-207)||(1469032-1469097)
chr7 (152-195)||(32303858-32303901)
chr7 (147-195)||(31238929-31238977)
chr7 (148-194)||(15894683-15894729)
chr7 (148-194)||(15899346-15899392)
chr7 (148-200)||(33670226-33670278)
[»] chr5 (4 HSPs)
chr5 (130-195)||(34607087-34607152)
chr5 (139-207)||(31930558-31930626)
chr5 (147-200)||(31659046-31659099)
chr5 (148-193)||(33111274-33111319)
[»] chr2 (5 HSPs)
chr2 (130-198)||(30517121-30517189)
chr2 (148-200)||(37911532-37911584)
chr2 (139-197)||(6204289-6204347)
chr2 (153-195)||(36780883-36780925)
chr2 (152-194)||(20463500-20463542)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 8348083 - 8347945
Alignment:
Q  62 tgggttgatgagaattaatacaatgcagatgttgtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggctgcaattcattctcatca 161  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  8348083 tgggttgatgagaattaatacaatgcaggtgttgtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggttgcaattcattctcacca 8347984  T
Q  162 ttctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    |||||| ||||||||| ||||||||||||||||| ||||    
T  8347983 ttctcacatacaaaagccattctcatgtgatatgtcccc 8347945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 8348679 - 8348791
Alignment:
Q  92 gttgtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtga 191  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  8348679 gttgtttaaattgaaatttaaaatctccaccatctaaatttaatccaatggctgcaattcattctcaccattctcacatacaaaagccattctcatgtga 8348778  T
Q  192 tatgcccccatat 204  Q
    |||||||||||||    
T  8348779 tatgcccccatat 8348791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 52399028 - 52398964
Alignment:
Q  251 acccaaagaagaagactcagttacgacacgaacaatgtggaattttatccaaccctgtacaccct 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52399028 acccaaagaagaagactcagttacgacacgaacaatgtggaattttatccaaccctgtacaccct 52398964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 50464605 - 50464543
Alignment:
Q  138 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    ||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||    
T  50464605 aatggctgcaattcattctcaccattctcacgtacaaaagccattctcatgtgatatgccccc 50464543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 56303785 - 56303733
Alignment:
Q  146 caattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccc 198  Q
    ||||| ||||||  |||||||| ||||||||||||||||||||||||||||||    
T  56303785 caatttattctcgccattctcacatacaaaagtcattctcatgtgatatgccc 56303733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 39819461 - 39819403
Alignment:
Q  142 gctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    ||||||||| ||||||| ||||||||||||    |||||||||||||||||||||||||    
T  39819461 gctgcaatttattctcaccattctcatataagttagtcattctcatgtgatatgccccc 39819403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 30938021 - 30937972
Alignment:
Q  146 caattcattctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    ||||| |||||||||||||||| ||| | |||||||||||||||||||||    
T  30938021 caatttattctcatcattctcacatatagaagtcattctcatgtgatatg 30937972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 49489237 - 49489272
Alignment:
Q  201 atatatactggtgcccccactattcatattttctgg 236  Q
    ||||||| ||||||||||||||||||||||||||||    
T  49489237 atatatattggtgcccccactattcatattttctgg 49489272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 56304379 - 56304444
Alignment:
Q  141 ggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 207  Q
    |||| ||||| ||| ||| |||| ||| |||||||||||||||||||||||||| |||| |||||||    
T  56304379 ggctccaatttattatcaccattttcaaatacaaaagtcattctcatgtgatat-cccctatatata 56304444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 2296546 - 2296414
Alignment:
Q  62 tgggttgatgagaattaatacaatgcagatgttgtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggctgcaattcattctcatca 161  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||| ||    
T  2296546 tgggttgatgagaattaatacaatgcaggtgttgtttaaattgaagtttaaaatctccaccatctaaatttaatctaattactgcaattcattctcacca 2296447  T
Q  162 ttctcatatacaaaagtcattctcatgtgatat 194  Q
    |||||| ||||||||  ||||||||||||||||    
T  2296446 ttctcacatacaaaacccattctcatgtgatat 2296414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 22721982 - 22721926
Alignment:
Q  138 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatat 194  Q
    ||||||| ||||| |||||||||||||||||||| |||| |||||||||||| ||||    
T  22721982 aatggctacaatttattctcatcattctcatatataaaaatcattctcatgtcatat 22721926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 9956099 - 9956057
Alignment:
Q  152 attctcatcattctcatatacaaaagtcattctcatgtgatat 194  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  9956099 attctcatcattctcacatacaaaagtcattctcatgggatat 9956057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 30322441 - 30322383
Alignment:
Q  140 tggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccc 198  Q
    ||||||||||||||||||| |||||||| |||  | | |||||||||||||||||||||    
T  30322441 tggctgcaattcattctcaccattctcacataagatactcattctcatgtgatatgccc 30322383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 18100579 - 18100536
Alignment:
Q  152 attctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    |||||||||||||||||||| |||  ||||||||||||||||||    
T  18100579 attctcatcattctcatataaaaagttcattctcatgtgatatg 18100536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 15294703 - 15294654
Alignment:
Q  151 cattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    ||||||||||||||||| |||  |  ||||||||||||||||||||||||    
T  15294703 cattctcatcattctcacataagatggtcattctcatgtgatatgccccc 15294654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 47895545 - 47895423
Alignment:
Q  78 aatacaatgcagatgttgtttaaattgaagtttaaaatctccaccatctaaatttaattcaatggctgcaattcattctcatcattctcatatacaaaag 177  Q
    |||||||||||| | |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  47895545 aatacaatgcaggtattgtttaaattgaaatttaaaatctccaccatctaaatttaatccaatggctgcaattcattctcaccattctcacatacaaaag 47895446  T
Q  178 tcattctcatgtgatatgccccc 200  Q
     ||||||||||||||||||||||    
T  47895445 ccattctcatgtgatatgccccc 47895423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 37403347 - 37403278
Alignment:
Q  138 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 207  Q
    ||||||| ||||||||||||| |||||||||||| ||  ||||||||||| ||| |||||||||||||||    
T  37403347 aatggctacaattcattctcaccattctcatatataactgtcattctcatatgacatgcccccatatata 37403278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 29406861 - 29406805
Alignment:
Q  139 atggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    ||||||| |||||||||||||||||||||||||  || ||||||||||| |||||||    
T  29406861 atggctgtaattcattctcatcattctcatataagaatgtcattctcatatgatatg 29406805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 21783332 - 21783286
Alignment:
Q  154 tctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  21783332 tctcaccattctcacatacaaaagccattctcatgtgatatgccccc 21783286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 34083179 - 34083227
Alignment:
Q  152 attctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    ||||| ||||||||||  |||||||||||||||||||||||||| ||||    
T  34083179 attcttatcattctcacctacaaaagtcattctcatgtgatatggcccc 34083227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 27789364 - 27789434
Alignment:
Q  130 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    |||||| | |||||||||||| ||||||| |||||||| |||    | |||||||||||||||||||||||    
T  27789364 tttaatccgatggctgcaatttattctcaccattctcacataagttactcattctcatgtgatatgccccc 27789434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 38194311 - 38194249
Alignment:
Q  143 ctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatata 205  Q
    |||||||| ||||||| ||||||||||||  | | ||||| ||||||||||||||||| ||||    
T  38194311 ctgcaatttattctcaccattctcatataagatactcattttcatgtgatatgcccccctata 38194249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 45528439 - 45528395
Alignment:
Q  148 attcattctcatcattctcatatacaaaagtcattctcatgtgata 193  Q
    ||||||||||| |||||||||||| | |||||||||||||||||||    
T  45528439 attcattctcaccattctcatata-acaagtcattctcatgtgata 45528395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 4729 - 4798
Alignment:
Q  138 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 207  Q
    ||||||| ||||||||||||| |||||||||||| ||  ||||||||||| ||| |||||||||||||||    
T  4729 aatggctacaattcattctcaccattctcatatataactgtcattctcatatgacatgcccccatatata 4798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 35652225 - 35652273
Alignment:
Q  152 attctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  35652225 attctcaccattctcacatacaaaagtcattctcatgtgatatgccccc 35652273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 40935908 - 40935968
Alignment:
Q  139 atggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccc 199  Q
    |||||||||||| ||||||| |||||||| ||||||| ||||||||||||||| |||||||    
T  40935908 atggctgcaatttattctcaccattctcacatacaaatgtcattctcatgtgacatgcccc 40935968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 7565330 - 7565372
Alignment:
Q  153 ttctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  7565330 ttctcatcattctcacatacaaaaatcattctcatgtgatatg 7565372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 22980062 - 22980020
Alignment:
Q  153 ttctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    |||||| |||||||| ||| |||||||||||||||||||||||    
T  22980062 ttctcaccattctcacatataaaagtcattctcatgtgatatg 22980020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 32834370 - 32834404
Alignment:
Q  201 atatatactggtgcccccactattcatattttctg 235  Q
    ||||||| |||||||||||||||||||||||||||    
T  32834370 atatatattggtgcccccactattcatattttctg 32834404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 2779766 - 2779710
Alignment:
Q  142 gctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccc 198  Q
    ||||||||| ||||||| |||||||| |||    |||||||||||||||||||||||    
T  2779766 gctgcaatttattctcaccattctcacataagttagtcattctcatgtgatatgccc 2779710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 23709572 - 23709524
Alignment:
Q  158 atcattctcatatacaaaagtcattctcatgtgatatgcccccatatat 206  Q
    |||||||||||||| ||   |||||||||||||||||||||| ||||||    
T  23709572 atcattctcatatataactatcattctcatgtgatatgcccctatatat 23709524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 23728028 - 23727980
Alignment:
Q  158 atcattctcatatacaaaagtcattctcatgtgatatgcccccatatat 206  Q
    |||||||||||||| ||   |||||||||||||||||||||| ||||||    
T  23728028 atcattctcatatataactatcattctcatgtgatatgcccctatatat 23727980  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 23746484 - 23746436
Alignment:
Q  158 atcattctcatatacaaaagtcattctcatgtgatatgcccccatatat 206  Q
    |||||||||||||| ||   |||||||||||||||||||||| ||||||    
T  23746484 atcattctcatatataactatcattctcatgtgatatgcccctatatat 23746436  T

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Target: scaffold0059 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 8986 - 8927
Alignment:
Q  141 ggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    |||| ||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  8986 ggctccaatttattctcaccattctcacatacaaaagccattctcatgtgatatgccccc 8927  T

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Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 236412 - 236471
Alignment:
Q  141 ggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    |||| ||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  236412 ggctccaatttattctcaccattctcacatacaaaagccattctcatgtgatatgccccc 236471  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 42757396 - 42757466
Alignment:
Q  130 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    |||||| |||||||| ||||| |||||||  ||||||||||| ||| ||||||||||||||||||| ||||    
T  42757396 tttaatccaatggctacaatttattctcactattctcatatataaatgtcattctcatgtgatatgtcccc 42757466  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 12296210 - 12296133
Alignment:
Q  130 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 207  Q
    |||||| | |||||||||||| ||||||| |||||||| |||    || |||||||||||||||||||||||||||||    
T  12296210 tttaatccgatggctgcaatttattctcaccattctcacataagttagccattctcatgtgatatgcccccatatata 12296133  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 29702582 - 29702535
Alignment:
Q  148 attcattctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    |||||||||||||||| |||||||  |||||||||||||| |||||||    
T  29702582 attcattctcatcattttcatataacaaagtcattctcatatgatatg 29702535  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 35020886 - 35020933
Alignment:
Q  148 attcattctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    |||||||||| ||||||||| ||| || ||||||||||||||||||||    
T  35020886 attcattctcgtcattctcacataaaatagtcattctcatgtgatatg 35020933  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 8744249 - 8744299
Alignment:
Q  148 attcattctcatcattctcatatacaaaagtcattctcatgtgatatgccc 198  Q
    ||||||||||||||||||||||||  || ||||||||||  ||||||||||    
T  8744249 attcattctcatcattctcatataagaatgtcattctcacatgatatgccc 8744299  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 12300205 - 12300275
Alignment:
Q  130 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    |||||| | |||||||||||| ||||||| |||||||| |||    || ||||||||||||||||||||||    
T  12300205 tttaatccgatggctgcaatttattctcaccattctcacataagttagccattctcatgtgatatgccccc 12300275  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 21348345 - 21348411
Alignment:
Q  141 ggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 207  Q
    ||||| |||| ||||||| |||||||| |||  | |  |||||||||||||||||||||||||||||    
T  21348345 ggctgtaatttattctcaccattctcacataagatacccattctcatgtgatatgcccccatatata 21348411  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 35751651 - 35751688
Alignment:
Q  150 tcattctcatcattctcatatacaaaagtcattctcat 187  Q
    |||||||||||||||||||||| || ||||||||||||    
T  35751651 tcattctcatcattctcatataaaatagtcattctcat 35751688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 37810382 - 37810321
Alignment:
Q  138 aatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccc 199  Q
    |||||||| |||||||||  ||||||||||  || |||  ||||||||||||||||||||||    
T  37810382 aatggctgtaattcattcatatcattctcacctataaatatcattctcatgtgatatgcccc 37810321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 1274524 - 1274564
Alignment:
Q  160 cattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    ||||||| |||| ||| ||||||||||||||||||||||||    
T  1274524 cattctcgtatataaatgtcattctcatgtgatatgccccc 1274564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 1469032 - 1469097
Alignment:
Q  142 gctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 207  Q
    ||||||||| ||||||| |||||||| |||    ||||||||||||||||||||||||||||||||    
T  1469032 gctgcaatttattctcaccattctcacataagttagtcattctcatgtgatatgcccccatatata 1469097  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 32303858 - 32303901
Alignment:
Q  152 attctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    ||||||| |||||||| |||||||||||||||||||||||||||    
T  32303858 attctcaccattctcacatacaaaagtcattctcatgtgatatg 32303901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 31238929 - 31238977
Alignment:
Q  147 aattcattctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    |||||||||||||||||||||||||  || ||||||||||| |||||||    
T  31238929 aattcattctcatcattctcatataagaatgtcattctcatatgatatg 31238977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 15894729 - 15894683
Alignment:
Q  148 attcattctcatcattctcatatacaaaagtcattctcatgtgatat 194  Q
    |||||||||||||||||||||||| | | ||||||||||| ||||||    
T  15894729 attcattctcatcattctcatataaacatgtcattctcatatgatat 15894683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 15899346 - 15899392
Alignment:
Q  148 attcattctcatcattctcatatacaaaagtcattctcatgtgatat 194  Q
    |||||||||||||||||||||||| | | ||||||||||| ||||||    
T  15899346 attcattctcatcattctcatataaacatgtcattctcatatgatat 15899392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 33670278 - 33670226
Alignment:
Q  148 attcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    ||||||||| |||||| |||||||  ||  |||||||||||||||||||||||    
T  33670278 attcattcttatcattatcatataagaagttcattctcatgtgatatgccccc 33670226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 34607152 - 34607087
Alignment:
Q  130 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    |||||||  ||||||| |||||||||||||||||||||||||  || ||||||||||| |||||||    
T  34607152 tttaatttgatggctgtaattcattctcatcattctcatataagaatgtcattctcatatgatatg 34607087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 31930626 - 31930558
Alignment:
Q  139 atggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcccccatatata 207  Q
    |||||||||||| ||||||| |||||||| |||  | | |||||||||||||||||||||| |||||||    
T  31930626 atggctgcaatttattctcaccattctcacataagatactcattctcatgtgatatgcccctatatata 31930558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 31659046 - 31659099
Alignment:
Q  147 aattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    |||| ||||||| |||||||| ||||||| ||||||||||||||||||| ||||    
T  31659046 aatttattctcaccattctcacatacaaatgtcattctcatgtgatatgtcccc 31659099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 33111319 - 33111274
Alignment:
Q  148 attcattctcatcattctcatatacaaaagtcattctcatgtgata 193  Q
    |||||||||||||||||||||||| | | ||||||||||| |||||    
T  33111319 attcattctcatcattctcatataaacatgtcattctcatatgata 33111274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 30517189 - 30517121
Alignment:
Q  130 tttaattcaatggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgccc 198  Q
    |||||| | |||||||||||| |||||||||||||||| ||| |  | |||||||||||||||||||||    
T  30517189 tttaatccgatggctgcaatttattctcatcattctcacataaattactcattctcatgtgatatgccc 30517121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 37911584 - 37911532
Alignment:
Q  148 attcattctcatcattctcatatacaaaagtcattctcatgtgatatgccccc 200  Q
    ||||||||| ||||||||||||||  ||| |||||||||||||||||||||||    
T  37911584 attcattcttatcattctcatataagaaattcattctcatgtgatatgccccc 37911532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 6204347 - 6204289
Alignment:
Q  139 atggctgcaattcattctcatcattctcatatacaaaagtcattctcatgtgatatgcc 197  Q
    |||||||||||||||||||| |||||||| |||  | | ||||||||||||||||||||    
T  6204347 atggctgcaattcattctcaccattctcacataagatactcattctcatgtgatatgcc 6204289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 36780883 - 36780925
Alignment:
Q  153 ttctcatcattctcatatacaaaagtcattctcatgtgatatg 195  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  36780883 ttctcaccattctcacatacaaaagtcattctcatgtgatatg 36780925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 20463500 - 20463542
Alignment:
Q  152 attctcatcattctcatatacaaaagtcattctcatgtgatat 194  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||    
T  20463500 attcttatcattctcttatacaaaagtcattttcatgtgatat 20463542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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