View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12852_low_4 (Length: 312)
Name: NF12852_low_4
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12852_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 35618622 - 35618347
Alignment:
| Q |
19 |
gtttcaaaatctactactaaaagtgtcactctttgtctttgagcaggtgcgagtttagaaataaccttttgaagtgcatagtcaagcatccactcctcag |
118 |
Q |
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| T |
35618622 |
gtttcaaaagcttctattagaagggtcactctttgtctttgagctggtgcgagtttagaaataaccttttgaagtgcatagtcaagcatccactcctcag |
35618523 |
T |
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| Q |
119 |
annnnnnnctctcttccgatgtttggcggttaagaaaaactttctccccttcgaagttggcatctgaaggcaattctcttggtcttcttggattgatgtt |
218 |
Q |
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| T |
35618522 |
atttttttctctcttccgatgtttggcggttaagaaaaactttctccccttcgaagttggcatctgaaggcaattctcttggtcttcttggattgatgtt |
35618423 |
T |
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| Q |
219 |
tcttaccttatctaatgcctttacaaaccttttcaacatgattagctttttcagatggctccagctttttggtttg |
294 |
Q |
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| T |
35618422 |
tcttaccttatctaatgcctttacaaaccttttcaacatgattagctttttcagatggctccagctttttggtttg |
35618347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 35617596 - 35617293
Alignment:
| Q |
1 |
tcttgaactgtacgaatagtttcaaaatctactactaaaagtgtcactctttgtctttgagcaggtgcgagtttagaaataaccttttgaagtgcatagt |
100 |
Q |
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| T |
35617596 |
tcttgaacgggacgaatagtttcaaaagcttctactaaaagtgtcactctttgtctttgagcaggtgcgagtttagaaataaccttttgaagtgcataat |
35617497 |
T |
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| Q |
101 |
caagcatccactcctcagannnnnnnctctcttccgatgtttggcggttaagaaaaactttctccccttcgaagttggcatctgaaggcaattctcttgg |
200 |
Q |
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| T |
35617496 |
caagcatccactcctcagattttttcctctcttctgatgtttggcggttaagaagaactttctctgcttcaaagttggcatctgaaggcaattgtcttgg |
35617397 |
T |
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| Q |
201 |
tcttcttggattgatgtttcttaccttatctaatgcctttacaaaccttttcaacatgattagctttttcagatggctccagctttttggtttgatgtcc |
300 |
Q |
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|||||||| |||||||||| |||||| || |||||||||||||||||||| || | ||||| ||||||||||||||||||||||||| ||||| | ||| |
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| T |
35617396 |
tcttcttgagttgatgtttcgtaccttctccaatgcctttacaaacctttttaagaggattacctttttcagatggctccagcttttttgtttgctctcc |
35617297 |
T |
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| Q |
301 |
atct |
304 |
Q |
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|||| |
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| T |
35617296 |
atct |
35617293 |
T |
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