View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12852_low_7 (Length: 274)
Name: NF12852_low_7
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12852_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 51482368 - 51482614
Alignment:
| Q |
19 |
atcatatccataccaatctgtacctttgaagcagtaattttgagtatatgtggagttgtacacaatctgccctccagtattttttatatccttgtacttc |
118 |
Q |
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| T |
51482368 |
atcatatccataccaatctgtacctttgaagcagtaattttgagtatatgtggagttgtacacaatctgccctccagtattttttatatccttgtacttc |
51482467 |
T |
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| Q |
119 |
actgcccctagtccctgcgtagctttactataaattctacggttattaggatctgccaatctccacttataaccatagaagggtaaaccaagtgcaagtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51482468 |
actgcccctagtccctgcgtagctttactataaattctacggttattaggatctgccaatctccacttataaccatagtagggtaaaccaagtgcaagtt |
51482567 |
T |
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| Q |
219 |
tgctttttggcacacctaaccctacccatttattgataccttcatct |
265 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51482568 |
tgttttttggcacacctaaccctacccatttattgataccttcatct |
51482614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 51467458 - 51467704
Alignment:
| Q |
19 |
atcatatccataccaatctgtacctttgaagcagtaattttgagtatatgtggagttgtacacaatctgccctccagtattttttatatccttgtacttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||| |
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| T |
51467458 |
atcatatccataccaatctgtacctttgaagcagtaattttgagcatatgtggagttgtacacaatctgtgccccatcattttttatatccttgtacttc |
51467557 |
T |
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| Q |
119 |
actgcccctagtccctgcgtagctttactataaattctacggttattaggatctgccaatctccacttataaccatagaagggtaaaccaagtgcaagtt |
218 |
Q |
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| T |
51467558 |
actgcccctaatccctgcgtagctttatcatgaattctatgtttattaggatctgccaaactccacttataaccatagaagggtaaaccaagtgcaagtt |
51467657 |
T |
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| Q |
219 |
tgctttttggcacacctaaccctacccatttattgataccttcatct |
265 |
Q |
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| T |
51467658 |
tgctttttggcacacctaaccctacccattttgtgataccttcatct |
51467704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 265
Target Start/End: Original strand, 48423880 - 48424122
Alignment:
| Q |
23 |
tatccataccaatctgtacctttgaagcagtaattttgagtatatgtggagttgtacacaatctgccctccagtattttttatatccttgtacttcactg |
122 |
Q |
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||||||||||||||||| ||| ||||||| ||||| | ||||||||| |||||||||| |||| | ||| |||| ||||||| ||||||||||||| |
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| T |
48423880 |
tatccataccaatctgtccctatgaagcaataattagtaacatatgtggaattgtacacaacctgcaccccaacatttattatatctttgtacttcactg |
48423979 |
T |
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| Q |
123 |
cccctagtccctgcgtagctttactataaattctacggttattaggatctgccaatctccacttataaccatagaagggtaaaccaagtgcaagtttgct |
222 |
Q |
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|||| || ||||| ||||||| | | ||||| | ||||||||||||||| ||| |||||||| |||||||||| |||| ||| | ||| |||||||| |
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| T |
48423980 |
ccccaagcccctgtgtagcttgatcaaaaatttcatggttattaggatctgacaaactccacttgaaaccatagaaaggtacacccaatgctagtttgct |
48424079 |
T |
|
| Q |
223 |
ttttggcacacctaaccctacccatttattgataccttcatct |
265 |
Q |
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|||||| || |||||||| | |||||| |||||||||||||| |
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| T |
48424080 |
ttttggaactcctaacccaatccattttgtgataccttcatct |
48424122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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