View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12852_low_9 (Length: 250)
Name: NF12852_low_9
Description: NF12852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12852_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 40855518 - 40855741
Alignment:
| Q |
10 |
gttcactgcctttatttctatcagttcagtagtactagcaagtgatgacaggcaatagttggtcacattcttaatcccaaatatggggctttttaacctt |
109 |
Q |
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| T |
40855518 |
gttcactgcctttatttctatcagttcagtagtactagcaagtgatgacaggcattagttggtcacattcttaatcccaaatatggggctttttaacctt |
40855617 |
T |
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| Q |
110 |
ttccattctgacataatgctattgaatgtgtgtccaagtaataataatttgaaatttttagtttgtatgtgtggccacacttttaatccttttattcatc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40855618 |
ttccattctgacataatgctattgaatgtgtgtccaagtaataataatttgaaatttttagtttgtacgtgtggccacacttttaatccttttattcatc |
40855717 |
T |
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| Q |
210 |
tattcctaatttgttttctttgat |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
40855718 |
tattcctaatttgttttctttgat |
40855741 |
T |
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