View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12853_high_1 (Length: 748)

Name: NF12853_high_1
Description: NF12853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12853_high_1
NF12853_high_1
[»] chr4 (5 HSPs)
chr4 (11-734)||(44728199-44728920)
chr4 (10-335)||(42927204-42927529)
chr4 (517-575)||(42927576-42927634)
chr4 (141-205)||(47879940-47880004)
chr4 (33-80)||(47842649-47842696)
[»] chr6 (3 HSPs)
chr6 (12-79)||(21354321-21354388)
chr6 (518-579)||(21111362-21111423)
chr6 (161-242)||(21282672-21282753)
[»] scaffold1787 (1 HSPs)
scaffold1787 (262-337)||(1274-1349)
[»] chr5 (2 HSPs)
chr5 (492-577)||(39240938-39241023)
chr5 (32-113)||(39241416-39241497)


Alignment Details
Target: chr4 (Bit Score: 681; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 11 - 734
Target Start/End: Original strand, 44728199 - 44728920
Alignment:
Q  11 gagaagaagcagaagcatgcagttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcagtctgataacttttagaccggccatctcaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44728199 gagaagaagcagaagcatgcagttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcagtctaataacttttagaccggccatctcaca 44728298  T
Q  111 agcgatacgtatctgggtttgctgcaatcgactgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcagccatttct 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44728299 agcgatacgtatccgggtttgctgcaatcgactgaacgaaactggaataataaacactacatttcttataggttgtttcagttcagtttcagccatttct 44728398  T
Q  211 tttaaattcaccagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtcca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44728399 tttaaattcaccagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtcca 44728498  T
Q  311 aagtgtgcatcagaaatgggaaattggcactttcattgaaaagtgcgctaatcaagtctttcaggttggaaattgcatcctcatgcgcttgggagagtga 410  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44728499 aagtgtgcatcagaaatgggaaattggcactttcgttgaaaagtgcgctaatcaagtctttcaggttggaaactgcatcctcatgcgcttgggagagtga 44728598  T
Q  411 gacgttgctactactagctccatcagtaaagacatgatcgaaagtttcgaaatatctcttaatcatctcatttatactttctttccaaatctccactctg 510  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44728599 gacgttactactactagctccatcagtaaagacatgatcgaaagtttcgaaatatctcttaatcatctcatttatactttctttccaaatctccactctg 44728698  T
Q  511 gaaccattccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaagaggcggcggcgaattttcctcctcgatagatg 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44728699 gaaccattccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaagaggcggcgacgaattttcctcctcgatagatg 44728798  T
Q  611 caggttctgtcatcctgcattcaaaggataataacaaaaatgttgagagttttcaaccaaaaacaatataatgtagatagcagaactaacactcataaat 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||    
T  44728799 caggttctgtcatcctgcattcaaaggataataacaaaaatgttgagagttttcaacc--aaacaatataatgtagatagcagaactaacacttataaat 44728896  T
Q  711 aacagctccgcaattatcattact 734  Q
    ||||||||||||||||||||||||    
T  44728897 aacagctccgcaattatcattact 44728920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 42927204 - 42927529
Alignment:
Q  10 agagaagaagcagaagcatgcagttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcagtctgataacttttagaccggccatctcac 109  Q
    ||||||||||||||||  ||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||   | | | |  ||| | |||  | ||     
T  42927204 agagaagaagcagaagtctgcagttgttgttgtgcataaaacaaagccactgctattggttgaggcatcagttcaacatcatcaagatcagcccacgcag 42927303  T
Q  110 aagcgatacgtatctgggtttgctgcaatcgactgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcagccatttc 209  Q
    |||||     |||||||||| || |||||||| |||| |||||||||| | |||||||||| |||||||| |||  |||||    | ||||| ||         
T  42927304 aagcgcgttctatctgggttcgccgcaatcgagtgaatgaaactggaacagtaaacactacctttcttataggtattttcacccgaatttcaaccgaaaa 42927403  T
Q  210 ttttaaattcaccagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtcc 309  Q
     ||||| ||||||||||| |||||||||||||||||||||||||| ||| | ||| |||| ||| ||| |||||| | ||||||||||| ||||||||||    
T  42927404 ctttaatttcaccagaaattttccaaggagttctactgcagtggtggatctacacgctttattcgcaattgcagcaataaaaggacgaaccttaatgtcc 42927503  T
Q  310 aaagtgtgcatcagaaatgggaaatt 335  Q
    |||||||||||||||||||| |||||    
T  42927504 aaagtgtgcatcagaaatggtaaatt 42927529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 517 - 575
Target Start/End: Original strand, 42927576 - 42927634
Alignment:
Q  517 ttccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcagg 575  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| || |||||||||    
T  42927576 ttccacacagaaacacggcatggtgatgtgccaatgtcaattccaattgctatttcagg 42927634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 47879940 - 47880004
Alignment:
Q  141 actgaacgaaactggaataataaacactacatttcttattggttgtttcagttcagtttcagcca 205  Q
    |||||| ||||||||||   |||||||||||||||||||  || ||||||||| |||||||||||    
T  47879940 actgaaggaaactggaactgtaaacactacatttcttatccgtcgtttcagttgagtttcagcca 47880004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 47842696 - 47842649
Alignment:
Q  33 ttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcag 80  Q
    |||||| |||||||| | |||||||||||||||||||| |||||||||    
T  47842696 ttgttgctgtgcatacaacaaagccactgctgttggttgaggcatcag 47842649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 21354321 - 21354388
Alignment:
Q  12 agaagaagcagaagcatgcagttgttgatgtgcataaagcaaagccactgctgttggttcaggcatca 79  Q
    ||||||||||||||||||||||||||| |||||||| | || ||||||||||||| ||| ||| ||||    
T  21354321 agaagaagcagaagcatgcagttgttgttgtgcatacaacagagccactgctgttagttgaggaatca 21354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 579
Target Start/End: Original strand, 21111362 - 21111423
Alignment:
Q  518 tccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaaga 579  Q
    ||||||| |||||||| |||| |||| |||||||||||||||||| || |||||||| ||||    
T  21111362 tccacacggaaacacaacatgttgatgtgccaatgtcaattccaattgctatttcagcaaga 21111423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 21282672 - 21282753
Alignment:
Q  161 taaacactacatttcttattggttgtttcagttcagtttcagccatttcttttaaattcaccagaaagtttccaaggagttc 242  Q
    |||||| ||||||| |||| ||||||||  ||| | ||||||||||| || |||| | ||||||||| ||||||| ||||||    
T  21282672 taaacagtacattttttataggttgttttggttgaatttcagccattactattaattccaccagaaattttccaatgagttc 21282753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1787 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 1349 - 1274
Alignment:
Q  262 cacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtccaaagtgtgcatcagaaatgggaaattgg 337  Q
    |||||| || |||||||||| || | ||||||  ||| ||||||||||||  ||||||||||||||||||| ||||    
T  1349 cacactctgatcacaaatgcggcaataaaagggtgaaccttaatgtccaagctgtgcatcagaaatgggaagttgg 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 577
Target Start/End: Complemental strand, 39241023 - 39240938
Alignment:
Q  492 tttccaaatctccactctggaaccattccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaa 577  Q
    |||| |||||||||||  |||||||||||| || |  |||| |||| ||||  ||||||| |||||||||| || |||||||||||    
T  39241023 tttcaaaatctccacttgggaaccattccatactgctacactgcattgtgaggtgccaatatcaattccaactgctatttcaggaa 39240938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 39241497 - 39241416
Alignment:
Q  32 gttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcagtctgataacttttagaccggccatctcacaagc 113  Q
    ||||||| |||||||| | ||| ||||| |||||||||||||||||||| || | ||| |  ||||| |||||| |||||||    
T  39241497 gttgttgctgtgcatataacaatgccacagctgttggttcaggcatcagcctaagaacatgaagaccagccatcgcacaagc 39241416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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