View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12853_high_3 (Length: 325)

Name: NF12853_high_3
Description: NF12853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12853_high_3
NF12853_high_3
[»] chr6 (9 HSPs)
chr6 (160-308)||(33055601-33055741)
chr6 (160-308)||(25478351-25478491)
chr6 (160-308)||(27527203-27527343)
chr6 (160-266)||(33062984-33063090)
chr6 (152-266)||(22013924-22014038)
chr6 (162-308)||(28040664-28040802)
chr6 (163-252)||(17355375-17355464)
chr6 (160-257)||(27650961-27651058)
chr6 (161-254)||(15970565-15970657)
[»] chr3 (6 HSPs)
chr3 (160-308)||(19434968-19435108)
chr3 (152-308)||(28103769-28103917)
chr3 (152-266)||(28058577-28058691)
chr3 (152-266)||(28069002-28069116)
chr3 (160-308)||(6911420-6911564)
chr3 (199-311)||(11200699-11200803)
[»] chr1 (7 HSPs)
chr1 (160-308)||(16100706-16100846)
chr1 (160-308)||(47050607-47050747)
chr1 (160-308)||(14660026-14660166)
chr1 (152-266)||(17653520-17653634)
chr1 (160-308)||(14650235-14650375)
chr1 (160-308)||(29289172-29289312)
chr1 (160-266)||(19657542-19657649)
[»] chr4 (7 HSPs)
chr4 (160-308)||(4763584-4763727)
chr4 (152-224)||(27561325-27561397)
chr4 (213-308)||(27561230-27561317)
chr4 (160-252)||(11512948-11513039)
chr4 (162-252)||(5358734-5358824)
chr4 (61-107)||(40383358-40383404)
chr4 (213-254)||(54352037-54352078)
[»] chr5 (3 HSPs)
chr5 (152-259)||(5519605-5519712)
chr5 (162-266)||(42785455-42785559)
chr5 (160-266)||(15598659-15598764)
[»] chr8 (4 HSPs)
chr8 (162-266)||(4706773-4706877)
chr8 (160-308)||(18982382-18982521)
chr8 (164-266)||(26917464-26917567)
chr8 (152-242)||(15924891-15924982)
[»] scaffold0406 (1 HSPs)
scaffold0406 (160-266)||(3615-3721)
[»] chr2 (6 HSPs)
chr2 (152-266)||(44324032-44324146)
chr2 (161-242)||(2588117-2588198)
chr2 (152-251)||(808810-808909)
chr2 (213-308)||(45332676-45332763)
chr2 (160-217)||(45331962-45332019)
chr2 (163-266)||(31713836-31713938)
[»] scaffold0007 (1 HSPs)
scaffold0007 (160-254)||(60505-60599)
[»] chr7 (1 HSPs)
chr7 (152-251)||(28803513-28803613)
[»] scaffold0438 (1 HSPs)
scaffold0438 (162-257)||(7789-7884)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 33055601 - 33055741
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33055601 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33055700  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |||        |||||||||||||||||| | |||||||||||||||||    
T  33055701 caa--------cattgaaattttgatatagtcttatttggtttgataaa 33055741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 308
Target Start/End: Complemental strand, 25478491 - 25478351
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  25478491 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 25478392  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |        | |||||||||||||||||| | |||||||||||||||||    
T  25478391 c--------gacattgaaattttgatatagtcttatttggtttgataaa 25478351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 27527203 - 27527343
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  27527203 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 27527302  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |        | |||||||||||||||||| | |||||||||||||||||    
T  27527303 c--------gacattgaaattttgatatagtcttatttggtttgataaa 27527343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 33062984 - 33063090
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33062984 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33063083  T
Q  260 caacatt 266  Q
    | |||||    
T  33063084 cgacatt 33063090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 22013924 - 22014038
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  22013924 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 22014023  T
Q  252 cctcttgacaacatt 266  Q
    ||||||||| |||||    
T  22014024 cctcttgacgacatt 22014038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 162 - 308
Target Start/End: Original strand, 28040664 - 28040802
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    ||||||||||  ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||     
T  28040664 tttttatattatatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttgac- 28040762  T
Q  262 acattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
           | |||||||||||||||||| | |||||| ||||||||||    
T  28040763 -------gacattgaaattttgatatagtcttatttagtttgataaa 28040802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 17355375 - 17355464
Alignment:
Q  163 ttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcac 252  Q
    |||||||||| ||||| |||| || || |||||||||||| |||||||  ||||| ||||||| ||||||||||||||||| ||| |||||    
T  17355375 ttttatattctatttggatttgattatttcgattcctttttcattatacgcgatt-ctatattttctttaaagttgtggatttgggttcac 17355464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 27650961 - 27651058
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctctt 257  Q
    |||| ||||| || ||||| |||| || || | |||||||||||||||||   ||||||||||||  |||||||||||| ||| ||| ||||||||||    
T  27650961 gattgttatagtctatttggatttgattatttggattccttttcattatacatgatttctatatttcctttaaagttgttgatttggattcacctctt 27651058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 15970657 - 15970565
Alignment:
Q  161 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacct 254  Q
    |||||||||||| ||||| |||| || || ||||| ||||||||||||    |||||||||||| |  |||||||||||||| ||| |||||||    
T  15970657 atttttatattcgatttggatttgattatttcgat-ccttttcattatggatgatttctatattctaattaaagttgtggatttgggttcacct 15970565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 19434968 - 19435108
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  19434968 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 19435067  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |        | |||||||||||||||||| | |||||||||||||||||    
T  19435068 c--------gacattgaaattttgatatagtcttatttggtttgataaa 19435108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 152 - 308
Target Start/End: Original strand, 28103769 - 28103917
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||| ||||||||||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||    
T  28103769 ttaagcctgatttttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttca 28103868  T
Q  252 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |||||||||        | |||||| ||||||||||| | |||||||||||||||||    
T  28103869 cctcttgac--------gacattgagattttgatatagtcttatttggtttgataaa 28103917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 28058691 - 28058577
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28058691 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28058592  T
Q  252 cctcttgacaacatt 266  Q
    | ||||||| |||||    
T  28058591 cttcttgacgacatt 28058577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 28069116 - 28069002
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28069116 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28069017  T
Q  252 cctcttgacaacatt 266  Q
    | ||||||| |||||    
T  28069016 cttcttgacgacatt 28069002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 160 - 308
Target Start/End: Complemental strand, 6911564 - 6911420
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctgg-tttcacctcttg 258  Q
    ||||||||||||| ||||| | || || |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||    
T  6911564 gatttttatattctatttggacttgattatctcgattctttttcattataatcgatttatatattttctttaaagttgtggatttggttttcacctcttg 6911465  T
Q  259 acaacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    || ||     | |||||||||| |||||||   |||||||||||||||||    
T  6911464 acgac-----gacattgaaattctgatatagccttatttggtttgataaa 6911420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 11200699 - 11200803
Alignment:
Q  199 ttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttg 298  Q
    ||||||||||| ||||||| ||||||  ||||| |||| | ||| |||||||||||||| || |||||        | |||||||||||| | |||||||    
T  11200699 ttttcattatactcgatttatatatttcctttatagttattgatttggtttcacctctttacgacatt--------ggaattttgatatagttttatttg 11200790  T
Q  299 gtttgataaattt 311  Q
    |||||||||||||    
T  11200791 gtttgataaattt 11200803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 16100706 - 16100846
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  16100706 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 16100805  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |        | |||||||||||||||||| | |||||||||||||||||    
T  16100806 c--------gacattgaaattttgatatagtcttatttggtttgataaa 16100846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 308
Target Start/End: Complemental strand, 47050747 - 47050607
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  47050747 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 47050648  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |        | |||||||||||||||||| | |||||||||||||||||    
T  47050647 c--------gacattgaaattttgatatagtcttatttggtttgataaa 47050607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 14660026 - 14660166
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14660026 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14660125  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |        | |||||||||||||||||| | |||||||||||||||||    
T  14660126 c--------gacattgaaattttgatatagtcttatttggtttgataaa 14660166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 17653634 - 17653520
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  17653634 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 17653535  T
Q  252 cctcttgacaacatt 266  Q
    ||||||||| |||||    
T  17653534 cctcttgacgacatt 17653520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 14650235 - 14650375
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| |  |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14650235 gatttttatattctatttggatttgactatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14650334  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |        | |||||||||||||||||| | |||||||||||||||||    
T  14650335 c--------gacattgaaattttgatatagtcttatttggtttgataaa 14650375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 308
Target Start/End: Complemental strand, 29289312 - 29289172
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    |||| |||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||    
T  29289312 gattgttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttcacctcttga 29289213  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |        | ||||||||||||| |||| | |||||||||||||||||    
T  29289212 c--------gacattgaaattttgttatagtcttatttggtttgataaa 29289172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 266
Target Start/End: Complemental strand, 19657649 - 19657542
Alignment:
Q  160 gatttttatattcaatttgaattta-atcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttg 258  Q
    ||||||||||||| ||||| ||||  || || || |||||||||||||||    |||||||||||| ||||||| |||| |||| ||| || |||||||     
T  19657649 gatttttatattctatttggatttctattatttcaattccttttcattatgtgtgatttctatattttctttaaggttgcggatttgggttgacctcttt 19657550  T
Q  259 acaacatt 266  Q
    ||||||||    
T  19657549 acaacatt 19657542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 160 - 308
Target Start/End: Complemental strand, 4763727 - 4763584
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  4763727 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 4763628  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    | ||     | |||||||||| |||||||   |||||||||||||||||    
T  4763627 cgac-----gacattgaaattctgatatagccttatttggtttgataaa 4763584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 27561397 - 27561325
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatatt 224  Q
    ||||||| || |||||||||| ||||| |||| || |||||||||||||||||||||||||||||| ||||||    
T  27561397 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatatt 27561325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 27561317 - 27561230
Alignment:
Q  213 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||||||        | |||||||||||||||||| | |||||||||||||||||    
T  27561317 gatttatatattttctttaaagttgtggatttggtttcacctcttgac--------gacattgaaattttgatatagtcttatttggtttgataaa 27561230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 11513039 - 11512948
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 252  Q
    ||||||||||||| ||||| |||| || || ||||||||||||||||||    ||||| | |||| ||||||||||||||||| ||| |||||    
T  11513039 gatttttatattctatttggatttgattatttcgattccttttcattatgcatgattt-tttattttctttaaagttgtggatttgggttcac 11512948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 5358824 - 5358734
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 252  Q
    ||||||||||| ||||| |||| || || |  ||||||| |||||||| || |||||||||||  ||||||||| || ||| |||||||||    
T  5358824 tttttatattctatttggatttgattattttcattccttctcattatactctatttctatatttgctttaaagtggtagatttggtttcac 5358734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 40383358 - 40383404
Alignment:
Q  61 aacatgacagatattttgcaacatgagatattaaatttggctttcaa 107  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  40383358 aacatgagagatatttttcaatatgagatatttaatttggctttcaa 40383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 54352078 - 54352037
Alignment:
Q  213 gatttctatattatctttaaagttgtggatctggtttcacct 254  Q
    |||||||||| |||||||||| |||||||| |||||||||||    
T  54352078 gatttctatactatctttaaaattgtggatttggtttcacct 54352037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 152 - 259
Target Start/End: Complemental strand, 5519712 - 5519605
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  5519712 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 5519613  T
Q  252 cctcttga 259  Q
    ||||||||    
T  5519612 cctcttga 5519605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 42785455 - 42785559
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    ||||||||||  ||||| |||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||     
T  42785455 tttttatattttatttggatttgattatctcgattcattttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgacg 42785554  T
Q  262 acatt 266  Q
    |||||    
T  42785555 acatt 42785559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 15598659 - 15598764
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || || ||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| |||||||||| |    
T  15598659 gatttttatattctatttggatttgattatttcgattccttt-cattatacgcgatttctatattttctttaaagttgtggatttggattcacctcttta 15598757  T
Q  260 caacatt 266  Q
    | |||||    
T  15598758 cgacatt 15598764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 4706877 - 4706773
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    ||||||||||  ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  4706877 tttttatattttatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgaca 4706778  T
Q  262 acatt 266  Q
    |||||    
T  4706777 acatt 4706773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 18982382 - 18982521
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||| || ||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||    
T  18982382 gatttttatattctattgga-tttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggattgggtttcacctcttga 18982480  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    |        | |||||||||||||| ||| | |||||||||||||||||    
T  18982481 c--------gacattgaaattttgacatagtcttatttggtttgataaa 18982521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 26917567 - 26917464
Alignment:
Q  164 tttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaa 262  Q
    ||||||||| ||||| |||| || || |||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| ||||| |||| || |    
T  26917567 tttatattctatttggatttgattatttcgattcctttttcattatacgcgatttctatattttctttaaagttgtggatttgggttcacttctttacga 26917468  T
Q  263 catt 266  Q
    ||||    
T  26917467 catt 26917464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 15924891 - 15924982
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggat 242  Q
    ||||||| |||||||| |||| ||||| |||| || || |||||||||||| || ||||  ||||||||||||| |||||||| ||||||||    
T  15924891 ttaagtccgatttttacattctatttggatttgattatttcgattcctttttcactatatgcgatttctatattttctttaaaattgtggat 15924982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 3615 - 3721
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| || ||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||    
T  3615 gatttttatattctatgtgaatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttagtttcacctcttga 3714  T
Q  260 caacatt 266  Q
    | |||||    
T  3715 cgacatt 3721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 44324032 - 44324146
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  44324032 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 44324131  T
Q  252 cctcttgacaacatt 266  Q
    ||||||||| |||||    
T  44324132 cctcttgacgacatt 44324146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 2588117 - 2588198
Alignment:
Q  161 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggat 242  Q
    |||||||||||| ||||| |||| || |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  2588117 atttttatattctatttggatttgattatcttgattccttttcattataatcgatttatatattttctttaaagttgtggat 2588198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 808909 - 808810
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| || |||||||||| ||||| |||| || |||||||||| |||||||||||  || |||||||||| |||||||| |||||||| ||| ||||    
T  808909 ttaagtccgacttttatattctatttggatttgattatctcgattctttttcattatacgcggtttctatattttctttaaaattgtggatttgggttca 808810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 45332676 - 45332763
Alignment:
Q  213 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaa 308  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||||||        | |||||||||||||||||| | |||||||||||||||||    
T  45332676 gatttatatattttctttaaagttgtggatttggtttcacctcttgac--------gacattgaaattttgatatagtcttatttggtttgataaa 45332763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 45331962 - 45332019
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgattt 217  Q
    ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  45331962 gatttttatattctatttggatttgattatctcgattccttttcattataatcgattt 45332019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 31713836 - 31713938
Alignment:
Q  163 ttttatattcaatttgaatttaatcatctcgattcc-ttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    |||||||||| ||||| |||| || || |||||||| |||||||||||  ||| ||||||||| ||||| ||||||||||| ||| ||||| || | |||    
T  31713836 ttttatattctatttggatttgattatttcgattcctttttcattatacgcga-ttctatattttcttt-aagttgtggatttgggttcacttccttaca 31713933  T
Q  262 acatt 266  Q
    |||||    
T  31713934 acatt 31713938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 60505 - 60599
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacct 254  Q
    |||| |||||||| ||||| |||| || || ||||||||||||||||||  | |||||| ||||| |||||||||||| |||| ||| |||||||    
T  60505 gattgttatattctatttggatttgattatttcgattccttttcattatgcttgatttcgatattttctttaaagttgcggatttggattcacct 60599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 28803513 - 28803613
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttc 250  Q
    |||||||  ||||||||| || ||||| |||| || || |||||||||||| |||||||  ||||||||||||| |||||||| |||||||| ||| |||    
T  28803513 ttaagtccaatttttatactctatttggatttgattatttcgattcctttttcattatatgcgatttctatattctctttaaaattgtggatttgggttc 28803612  T
Q  251 a 251  Q
    |    
T  28803613 a 28803613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 257
Target Start/End: Complemental strand, 7884 - 7789
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctctt 257  Q
    |||| |||||| ||||| |||| || || ||||||| ||||||| |||  |  |||||||||| ||||||||||||| ||| ||| ||||||||||    
T  7884 ttttcatattctatttggatttgattatttcgattcattttcatcatacccagtttctatattttctttaaagttgttgatttggattcacctctt 7789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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