View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12853_low_3 (Length: 363)

Name: NF12853_low_3
Description: NF12853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12853_low_3
NF12853_low_3
[»] chr2 (7 HSPs)
chr2 (11-346)||(32445125-32445463)
chr2 (169-285)||(32438445-32438561)
chr2 (88-127)||(28037314-28037353)
chr2 (307-346)||(32438412-32438451)
chr2 (17-107)||(11985087-11985177)
chr2 (47-125)||(27477336-27477414)
chr2 (73-129)||(9374374-9374430)
[»] chr7 (1 HSPs)
chr7 (1-130)||(3861077-3861206)
[»] chr5 (2 HSPs)
chr5 (1-122)||(11192508-11192629)
chr5 (1-105)||(28235724-28235831)
[»] chr1 (2 HSPs)
chr1 (47-127)||(6017709-6017789)
chr1 (85-127)||(799665-799707)
[»] chr6 (1 HSPs)
chr6 (88-143)||(25337790-25337845)
[»] chr3 (1 HSPs)
chr3 (13-99)||(30293348-30293433)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 32445463 - 32445125
Alignment:
Q  11 ctttaattttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatcatttacatttttaata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||| |||||||||||||||||||| ||||||| |    
T  32445463 ctttaattttatcttattatttgtaagagttttgcagttatatgttattaacttggatgtagtgagtttgttggcatattcatcatttacgtttttaaca 32445364  T
Q  111 atgttaaatgatgtactctacttgtttgaatgagttaacatg----gtaataaataaaataatctataataacgacatttggattccggtaaggaatata 206  Q
     ||||||    |||||||||||| ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32445363 gtgttaa----tgtactctacttatttgaatgagttaacatgttttgtaataaataaaataatctataataacgacatttggattccggtaaggaatata 32445268  T
Q  207 taaccgaacaaactgcacgttggttgaagccaattatagtatgcccatgtgaatttcttctttgttttctttttggaaa---gnnnnnnnnnccttgaca 303  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||    
T  32445267 taaccgaacaaactgcacgttagttgaagccaattatagtatgcccatgtgaatttcttctttgttttctttttggaaatagttttttttttccttgaca 32445168  T
Q  304 agattggaaatagttgctgtcatgtgattagaacccaaacact 346  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32445167 agattggaaatagttgctgtcatgtgattagaacccaaacact 32445125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 32438561 - 32438445
Alignment:
Q  169 tctataataacgacatttggattccggtaaggaatatataaccgaacaaactgcacgttggttgaagccaattatagtatgcccatgtgaatttcttctt 268  Q
    ||||||| ||||||| ||||||||||||| |||||||||| ||||| |||| ||| ||| |||| ||||| |||||| ||| |||||||| |||||||||    
T  32438561 tctataagaacgacagttggattccggtagggaatatatagccgaaaaaacagcatgttagttggagccatttatagcatgaccatgtgattttcttctt 32438462  T
Q  269 tgttttctttttggaaa 285  Q
    |||||||||||||||||    
T  32438461 tgttttctttttggaaa 32438445  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 28037314 - 28037353
Alignment:
Q  88 attcatcatttacatttttaataatgttaaatgatgtact 127  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  28037314 attcatcatttacatttttaacgatgttaaatgatgtact 28037353  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 32438451 - 32438412
Alignment:
Q  307 ttggaaatagttgctgtcatgtgattagaacccaaacact 346  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  32438451 ttggaaataggtgttgtcatgtgattagaacccaaacact 32438412  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 11985177 - 11985087
Alignment:
Q  17 ttttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatcatttacattttta 107  Q
    ||||||| ||||||||||| |  |||||| ||| |||  ||||||||||||| |  ||||||| || ||| ||||||||||||| ||||||    
T  11985177 ttttatcatattatttgtaggcattttgctgttgtatcctattaacttggatgttgtgaatttgttcgcaaattcatcatttacgttttta 11985087  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 27477336 - 27477414
Alignment:
Q  47 gttatatattattaacttggatttaatgaattttttggcatattcatcatttacatttttaataatgttaaatgatgta 125  Q
    |||| ||| ||||||||||||| |  ||| | | || ||| ||||||||||||||||||||| |||||| |||||||||    
T  27477336 gttaaatactattaacttggatgttgtgagtatgttcgcagattcatcatttacatttttaacaatgttgaatgatgta 27477414  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 9374430 - 9374374
Alignment:
Q  73 tgaattttttggcatattcatcatttacatttttaataatgttaaatgatgtactct 129  Q
    |||||||||| ||||||||||||||||| ||||||    |||| |||||||||||||    
T  9374430 tgaattttttcgcatattcatcatttacgtttttagccgtgttgaatgatgtactct 9374374  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 3861077 - 3861206
Alignment:
Q  1 atttcgatccctttaattttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatcatttac 100  Q
    |||||| || ||||||||||||| |||||| |||| |  ||||||  |||||| |||| ||||||||| | |||| ||| ||  ||||||||| ||||||    
T  3861077 atttcggtcactttaattttatcatattatgtgtaggctttttgccattatatgttatcaacttggatgttatgagtttgttcacatattcataatttac 3861176  T
Q  101 atttttaataatgttaaatgatgtactcta 130  Q
     |||||| | ||||| ||||  ||||||||    
T  3861177 gtttttagtgatgttgaatggggtactcta 3861206  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 11192508 - 11192629
Alignment:
Q  1 atttcgatccctttaattttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatcatttac 100  Q
    ||||||||| |||||| |||||| |||||||||||||  |||||  ||| ||| |||||||||| ||| |  | ||||| ||||||  || |||||||||    
T  11192508 atttcgatcactttaaatttatcgtattatttgtaagcattttgtcgttgtatgttattaactttgatgttgtaaatttgttggcaggtttatcatttac 11192607  T
Q  101 atttttaataatgttaaatgat 122  Q
     |||||||  || |||||||||    
T  11192608 gtttttaacgatattaaatgat 11192629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 28235724 - 28235831
Alignment:
Q  1 atttcgatccctttaattttatcttat-tatttgtaagagttttgcagttatatat--tattaacttggatttaatgaattttttggcatattcatcatt 97  Q
    ||||||||| ||||||||||||| ||| | |||||| |  || ||| |||||||||  ||||||||||||| |  ||| ||| || ||| ||||||||||    
T  28235724 atttcgatcactttaattttatcatatatttttgtaggcattatgccgttatatatgctattaacttggatgttgtgagtttgttcgcagattcatcatt 28235823  T
Q  98 tacatttt 105  Q
    ||||||||    
T  28235824 tacatttt 28235831  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 6017709 - 6017789
Alignment:
Q  47 gttatatattattaacttggatttaatgaattttttggcatattcatcatttacatttttaataatgttaaatgatgtact 127  Q
    |||||||| ||||||||||||| |  ||||||| || ||| |||||||||||  ||||||||||| ||| || ||||||||    
T  6017709 gttatatactattaacttggatgttgtgaatttatttgcagattcatcatttttatttttaataacgttgaaagatgtact 6017789  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 799707 - 799665
Alignment:
Q  85 catattcatcatttacatttttaataatgttaaatgatgtact 127  Q
    |||||||||||||||| |||||||| ||||| |||||||||||    
T  799707 catattcatcatttacgtttttaatgatgttgaatgatgtact 799665  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 25337790 - 25337845
Alignment:
Q  88 attcatcatttacatttttaataatgttaaatgatgtactctacttgtttgaatga 143  Q
    |||||||||||| ||||||| || ||||||||||||||||||| |  |||||||||    
T  25337790 attcatcatttatatttttagtagtgttaaatgatgtactctattaatttgaatga 25337845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 30293433 - 30293348
Alignment:
Q  13 ttaattttatcttattatttgtaagagttttgcagttatatattattaacttggatttaatgaattttttggcatattcatcattta 99  Q
    |||| |||||| ||||||||||||| ||||||| |||||||  ||||||||||||| | |||| ||| || ||| ||||||| ||||    
T  30293433 ttaactttatcatattatttgtaagtgttttgc-gttatatgctattaacttggatgtcatgagtttatttgcagattcatctttta 30293348  T

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