View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12853_low_6 (Length: 309)
Name: NF12853_low_6
Description: NF12853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12853_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 3068456 - 3068745
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatgtcttggagtatgcttgtgaaatatttactgttcactaaa |
100 |
Q |
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| T |
3068456 |
accagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatgtcttggagtatacttgtgaaatatttactgttcactaaa |
3068555 |
T |
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| Q |
101 |
cgcagttacttgttactctaggtccctccatcagaaaattcaaaactaatgagttttggctcaaatcatcattatcttgaatgtattaaggctgcttata |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3068556 |
cgcagctacttgttactctaggtccctccatcagaaaattcaaaactaatgagttttggctcaaatcatcattatcttgaatgtattaaggctgcttata |
3068655 |
T |
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| Q |
201 |
actttgcaagtggtgaactcgtgaatctcatcaaggaaaaggtgattttgaatatgattaggcttttaagttctcagcttacagtttaat |
290 |
Q |
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| T |
3068656 |
actttgcaagtggtgaactcgtgaatctcatcaaggaaaaggtgattttgaatatgattaggcttttaagttctcagcttacagtttaat |
3068745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 64 - 291
Target Start/End: Original strand, 3081715 - 3081943
Alignment:
| Q |
64 |
ttggagtatgcttgtgaaatatttactgttcactaaacgcagttacttgttactctaggtccctccatcagaaaattcaaaactaatgagttttggctca |
163 |
Q |
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||||||| ||||||||||||||||||||||||||||| | |||||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
3081715 |
ttggagtgtgcttgtgaaatatttactgttcactaaatgtagttactttttattctaggtgcctccatcagaaaattcgaaactaatgagctttggctca |
3081814 |
T |
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| Q |
164 |
aatcatcattatcttgaatgtattaaggctgcttataactttgcaagtggtgaactcgtgaatctcatcaaggaaaaggtgattttgaatatgattaggc |
263 |
Q |
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| T |
3081815 |
aatcatcattatcttgaatgtatcaaggctgcttataactttgcaagtggtgaactcgtgaatctcattaaggaaaaggtgattttaaatatatttaggc |
3081914 |
T |
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| Q |
264 |
-ttttaagttctcagcttacagtttaatg |
291 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3081915 |
tttttaagttctcagcttacagtttaatg |
3081943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3034006 - 3033946
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
61 |
Q |
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||||||||||||||| ||||||| |||||||| ||| || ||||||||||||||||||||| |
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| T |
3034006 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatg |
3033946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3042046 - 3041986
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
61 |
Q |
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||||||||||||||| ||||||| |||||||| ||| || ||||||||||||||||||||| |
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| T |
3042046 |
accagaaggtgaaagtaaccatgtagagttgctggtgtcagcagtaaaagaatcaccaatg |
3041986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3064432 - 3064492
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
61 |
Q |
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|||||||||||||||||||||||||||| | | ||| | |||||||||||||||||||||| |
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| T |
3064432 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatg |
3064492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3054868 - 3054808
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
61 |
Q |
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||||||||| ||||||||||||| |||||||| || || ||||||||||||||||||||| |
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| T |
3054868 |
accagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatg |
3054808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3066469 - 3066529
Alignment:
| Q |
1 |
accagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
61 |
Q |
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|||||||||||||| |||||||| |||| || ||| | |||||||||||||||||||||| |
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| T |
3066469 |
accagaaggtgaaaacaaccatgaagaggtgttggtttgtgcagtaaaagaatcaccaatg |
3066529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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