View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12854_high_1 (Length: 473)
Name: NF12854_high_1
Description: NF12854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12854_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 457
Target Start/End: Complemental strand, 45946398 - 45945949
Alignment:
| Q |
20 |
agagcgacatatagaatagttaaatttagagagaaaggaaatcttctctataaattaaatgactcgacaacccccaagaccatacaacggccgtaaaaga |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45946398 |
agagcgacgtatagaatagttaaatttagagagaaaggaaatcttctctataaattaaatgactcgacaacccccaagaccatacaacggccgtaaaaga |
45946299 |
T |
|
| Q |
120 |
ttcaaacccgagtggatggtatgacccttggcattcggcttttaaatatgaaaggagcgcctataaatagaagtatggcgaacataaaaagaatatttat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45946298 |
ttcaaacccgagtggatggtatgacccttggcattcggcttttaaatatgaaaggagcgcctataaatagaagtatggcgaacataaaaagaatatttat |
45946199 |
T |
|
| Q |
220 |
ggatatgaaactagacaccttttgtatgacctgctatgacatgatttgcaatgtgttatatgcttcatcattaccttaacggcctttttgactcaaaaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45946198 |
ggatatgaaactagacaccttttgtatgacctgctatgacatgatttgcaatgtgttatatgcttcatcattaccttaacggcctttttgactcaaaaac |
45946099 |
T |
|
| Q |
320 |
attttgtattggttaat------------atttaattctaatgcaacacttagccaaatttataaaagcataacgcagatagttaaaaatgagcataagg |
407 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45946098 |
attttgtattggttaatattttagattatatttaattctaatgcaacacttagccaaatttataaaagcataacgcagatagttaaaaatgagcataagg |
45945999 |
T |
|
| Q |
408 |
gatgctaacctggtttgataacaattcaaaaatccctctaagcttgtcag |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45945998 |
gatgctaacctggtttgataacaattcaaaaatccctctaagcttgtcag |
45945949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University