View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12854_high_2 (Length: 393)
Name: NF12854_high_2
Description: NF12854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12854_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 44782874 - 44782482
Alignment:
| Q |
1 |
agcagtactgttagataatagtacgttccgtcttcaaatacaaggaactcagaaaatacaaaattcatttgacttaacagtagtttacctggttgaccta |
100 |
Q |
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| T |
44782874 |
agcagtactgttagataatagtacgttccgtcttcaaatacaaggaactcagaaaatacaaaattcatttgacttaacagtagtttacctggttgaccta |
44782775 |
T |
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| Q |
101 |
caatagttcaccacaacaggataattcatgattgtgttgtctgtatagcacatcgagattgagttcccttgttctgataaatggatagcataacatattt |
200 |
Q |
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| T |
44782774 |
caatagttcaccacaacaggataattcatgattgtgttgtctgtatagcacatcgagattgagttcccttgttctgataaatggatagcataacatattt |
44782675 |
T |
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| Q |
201 |
ttgtaatatctggtcttgcgtgggtatacatacttcggtaatgaagattgatttgcttgccgctgcattatgtttgctgagcatacttgtaaatcctaaa |
300 |
Q |
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| T |
44782674 |
ttgtaatatctggtcttgcgtgggtatacatacttcggtaatgaagattgatttgcttgccgctgcattatgtttgctgagcatacttgtaaatcctaaa |
44782575 |
T |
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| Q |
301 |
caactatgggggccattattccgctagaaatttgtttttgctttggagggatagggccttggaagttggaacagtttggtttggttatcttct |
393 |
Q |
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| T |
44782574 |
caactatgggggccattattccgctagaaatttgtttttgctttggagggatagggccttggaagttggaacagtttggtttggttttcttct |
44782482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 38 - 352
Target Start/End: Complemental strand, 48422874 - 48422547
Alignment:
| Q |
38 |
atacaaggaactcagaaaatacaaaattcatttgacttaa----cagtagtttacctggttgacctacaatagttcaccacaacaggataattcatgatt |
133 |
Q |
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||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| || ||||||||| || || || | || ||||| |
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| T |
48422874 |
atacaaggaactcagaaaatacagatttcatttgacttaatcatcagtagtttacctggttgaccaacgatagttcactactgcaagacagtttgtgatt |
48422775 |
T |
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| Q |
134 |
gtgttgtctgtatagcacatcgagattgagtt-cccttgttctgataaatggatagcataacatatttttgtaatatctggtcttgcgtgggtatacata |
232 |
Q |
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||||||| || ||||||| ||||||||||| |||| ||||||| ||||||||||||||| |||||||||||| |||||||| | |||||| | | |
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| T |
48422774 |
aggttgtctatacagcacattgagattgagttggccttcttctgatggatggatagcataacaagtttttgtaatatatggtcttgtgggggtatgtaaa |
48422675 |
T |
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| Q |
233 |
cttcggtaatgaagattgatttgcttgccgctgcattatgtttgct--------gagcatacttgtaaatcctaaacaactatgggggccattattccgc |
324 |
Q |
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| T |
48422674 |
cttcaaaaatgaagaatgatatgcttattgctgcatcatgtttgctactttgcggaacatacttgtcaatcctgaacaactttgggggccgttattacac |
48422575 |
T |
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| Q |
325 |
tagaaatttgtttttgctttggagggat |
352 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
48422574 |
tagaaacatgtttttgctttggagggat |
48422547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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