View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12854_low_3 (Length: 330)
Name: NF12854_low_3
Description: NF12854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12854_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 35617614 - 35617929
Alignment:
| Q |
1 |
agacttctgcaacggtggagtctcatgcaaatctgattcaatcacttgatgcttcctcgaatcatagcaaggaagaaataaacgacggaagggattttga |
100 |
Q |
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| T |
35617614 |
agacttctgcaacggtggagtctcatgcaaatctgattcaatcacttgatgcttcctcgaatcatagcaaggaagaaataaacgacagaagggattttga |
35617713 |
T |
|
| Q |
101 |
ggtaactgagagagcaaggaatgacaagaatatggatgcatgtaagaaaaatgatgaaagtgctactgtgaaatcaacagcaacaaaaacagtcaagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35617714 |
ggtaactgagagagcaaggaatgacaagaatatggatgcatgtaagaaaaatgatgaaagtgctactgtgaaatcaacagcaacaaaagcagtcaagttt |
35617813 |
T |
|
| Q |
201 |
ccagtttacgatactgggatattggaggaggaagtaacagccgaaggcgaatataaagtgcaggagaagagtattgtgcaggaagatcttaaacatggta |
300 |
Q |
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|| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35617814 |
ccggtttgcgatactgggataatggaggaggaagtaacagccgaaggcgaatataaagtgcaggagaagagtattgtgaaggaagatcttaaacatggta |
35617913 |
T |
|
| Q |
301 |
ctagtactactgatgt |
316 |
Q |
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|||||||||||||||| |
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| T |
35617914 |
ctagtactactgatgt |
35617929 |
T |
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