View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12854_low_6 (Length: 215)

Name: NF12854_low_6
Description: NF12854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12854_low_6
NF12854_low_6
[»] scaffold1240 (1 HSPs)
scaffold1240 (16-203)||(17-204)
[»] chr2 (10 HSPs)
chr2 (16-203)||(8854644-8854831)
chr2 (16-203)||(9073221-9073408)
chr2 (16-203)||(30819918-30820105)
chr2 (18-203)||(12857526-12857711)
chr2 (16-194)||(5145682-5145860)
chr2 (16-190)||(7585851-7586025)
chr2 (18-203)||(31185544-31185729)
chr2 (16-194)||(31205267-31205446)
chr2 (16-203)||(4278714-4278901)
chr2 (77-159)||(2779425-2779507)
[»] chr1 (14 HSPs)
chr1 (16-203)||(17785890-17786077)
chr1 (16-203)||(31470833-31471020)
chr1 (16-203)||(45241685-45241872)
chr1 (16-190)||(47297866-47298040)
chr1 (16-190)||(2475441-2475615)
chr1 (16-190)||(48385497-48385671)
chr1 (16-190)||(17676628-17676802)
chr1 (16-190)||(33166834-33167008)
chr1 (16-190)||(38837005-38837179)
chr1 (37-190)||(8470899-8471051)
chr1 (31-180)||(18318080-18318229)
chr1 (16-203)||(51522887-51523074)
chr1 (66-190)||(48407013-48407137)
chr1 (16-88)||(10265804-10265876)
[»] chr6 (9 HSPs)
chr6 (16-203)||(17958599-17958786)
chr6 (18-203)||(634317-634502)
chr6 (18-203)||(6377731-6377916)
chr6 (16-190)||(34841056-34841230)
chr6 (16-190)||(8221751-8221925)
chr6 (16-190)||(24916931-24917105)
chr6 (16-190)||(18641834-18642008)
chr6 (59-203)||(29952327-29952472)
chr6 (37-190)||(24114716-24114869)
[»] chr4 (13 HSPs)
chr4 (16-203)||(2212584-2212771)
chr4 (16-203)||(46914778-46914965)
chr4 (16-203)||(53181732-53181919)
chr4 (34-203)||(36658099-36658268)
chr4 (16-190)||(3530577-3530751)
chr4 (16-190)||(3615566-3615740)
chr4 (16-190)||(8994333-8994507)
chr4 (16-190)||(13113111-13113285)
chr4 (16-189)||(33606632-33606805)
chr4 (16-190)||(16172169-16172343)
chr4 (16-203)||(34434838-34435025)
chr4 (16-190)||(28900568-28900742)
chr4 (16-190)||(28446824-28446998)
[»] chr3 (22 HSPs)
chr3 (16-203)||(17469061-17469248)
chr3 (16-203)||(25788009-25788196)
chr3 (16-203)||(33935822-33936009)
chr3 (18-203)||(25829966-25830151)
chr3 (16-203)||(42598664-42598851)
chr3 (16-203)||(47146918-47147105)
chr3 (16-190)||(6045650-6045824)
chr3 (16-190)||(30415778-30415952)
chr3 (16-190)||(42563557-42563731)
chr3 (16-190)||(43475038-43475212)
chr3 (16-157)||(50019643-50019784)
chr3 (16-190)||(10424974-10425148)
chr3 (16-190)||(26157417-26157591)
chr3 (18-210)||(30689122-30689315)
chr3 (16-189)||(33188387-33188560)
chr3 (16-190)||(4874420-4874594)
chr3 (16-159)||(51429519-51429662)
chr3 (16-149)||(4852727-4852860)
chr3 (25-203)||(21227770-21227948)
chr3 (163-203)||(51429654-51429694)
chr3 (16-66)||(33751209-33751259)
chr3 (171-203)||(50019786-50019818)
[»] chr8 (12 HSPs)
chr8 (16-202)||(35101042-35101228)
chr8 (16-203)||(13816684-13816871)
chr8 (29-202)||(26749200-26749373)
chr8 (16-203)||(5213430-5213617)
chr8 (16-190)||(38205538-38205712)
chr8 (16-190)||(1955601-1955775)
chr8 (16-190)||(15056194-15056368)
chr8 (16-190)||(30529944-30530118)
chr8 (16-194)||(17744217-17744395)
chr8 (121-203)||(5735767-5735849)
chr8 (16-87)||(1633962-1634033)
chr8 (161-199)||(27392271-27392309)
[»] chr7 (7 HSPs)
chr7 (18-203)||(22193863-22194048)
chr7 (16-190)||(36521076-36521250)
chr7 (16-190)||(32127561-32127735)
chr7 (16-188)||(22659494-22659666)
chr7 (16-190)||(26814712-26814886)
chr7 (97-190)||(40301220-40301313)
chr7 (96-194)||(1940162-1940259)
[»] chr5 (9 HSPs)
chr5 (42-203)||(31012330-31012491)
chr5 (16-190)||(32973672-32973846)
chr5 (16-190)||(27945201-27945375)
chr5 (16-190)||(40891371-40891545)
chr5 (16-190)||(30646179-30646353)
chr5 (16-203)||(4579654-4579829)
chr5 (16-190)||(29616839-29617013)
chr5 (16-92)||(34710648-34710724)
chr5 (156-203)||(21365263-21365310)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-190)||(105423-105597)
[»] scaffold0021 (1 HSPs)
scaffold0021 (31-190)||(110521-110680)
[»] scaffold0007 (1 HSPs)
scaffold0007 (25-159)||(166670-166804)
[»] scaffold0658 (1 HSPs)
scaffold0658 (24-80)||(6549-6605)


Alignment Details
Target: scaffold1240 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 204 - 17
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  204 acatcatcttccgaccaaccgcttccttgcaaacgcttagtgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 105  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  104 ggcatgcaactagatcgcggagagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 17  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 8854644 - 8854831
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  8854644 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttactcatataattaaaacggtttc 8854743  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8854744 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 8854831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 9073408 - 9073221
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  9073408 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 9073309  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9073308 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 9073221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 30820105 - 30819918
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  30820105 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 30820006  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30820005 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 30819918  T

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Target: chr2; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 12857526 - 12857711
Alignment:
Q  18 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 117  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  12857526 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 12857625  T
Q  118 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12857626 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 12857711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 5145860 - 5145682
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  5145860 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 5145761  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttc 194  Q
    |||| |||| || ||| || |||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  5145760 ggcaagcaattacatcacgcggaggatcaaatgagcaatgctcattacaatactcagcaattttaccccaatatgtttc 5145682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 7586025 - 7585851
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  7586025 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 7585926  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  7585925 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 7585851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 31185729 - 31185544
Alignment:
Q  18 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 117  Q
    |||||||||||| ||||||||||||||||||| ||| |||   |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||    
T  31185729 atcatcttccgaccaaccgcttccttgcaaacgcttagcggcatcataagcactaatccatttatttattactttgctcatataattaaaacggttttgg 31185630  T
Q  118 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||||||||||||| || |||||||| ||||||| ||||||| ||||||||||| |||||||| ||||||||||||| || |||||    
T  31185629 catgcaactagatcccgcggagaatcaaatgagccatactcaatacaatactcatcaattttaccccaatatgtttcacccctctg 31185544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 31205446 - 31205267
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| |||   |||||||||| ||||||||||||||||||||| ||||||||||||||||  ||||    
T  31205446 acatcatcttccgaccaaccgcttccttgcaaacgcttagcggcatcataagcactaatccatttatttattactttgctcatataattaaaacagtttc 31205347  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcatta-caatactcagcaattttaacccaatatgtttc 194  Q
    |||||||||||||||| || |||||||| |||||||  ||||||||| ||||||||| |||||||| |||||||||||||    
T  31205346 ggcatgcaactagatcccgcggagaatcaaatgagccgtactcattaccaatactcatcaattttaccccaatatgtttc 31205267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 4278714 - 4278901
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||| | ||||| ||||| |||  |||||||| ||| ||||  |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||    
T  4278714 acatcagcctccgaccaaccacttatttgcaaacgcttagcgccatcataagcgccaatccatttatttagtactttgctcatataattaaaacggtttc 4278813  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    ||||||||| || ||| || | || |||||||||||||| |||||||||||||||| |||||||| ||||||||| ||| ||| ||||    
T  4278814 ggcatgcaattacatcacgcgaaggatcgaatgagcaatgctcattacaatactcaacaattttaccccaatatgcttcacctgtctg 4278901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 2779507 - 2779425
Alignment:
Q  77 atttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactca 159  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2779507 atttatttattactttgctcatataattaaaacggtttcggcatgcaactagatcgcggggagaatcgaatgagcaatactca 2779425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 17785890 - 17786077
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17785890 acatcatcttccgaccaaccgcttccttgcaaacgcttagtgctttcataagcaccaatccatttatttattactttgctcatataattaaaacgatttc 17785989  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  17785990 ggcatgcaactagatcgcggggataatcgaatgagcaatactcattacaatactcagcaattttaccccaatttgtttctcctctctg 17786077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 31470833 - 31471020
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  31470833 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 31470932  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31470933 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 31471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 45241685 - 45241872
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  45241685 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 45241784  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45241785 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 45241872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 47298040 - 47297866
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||  |||||||||||||||||||||||||||| ||| ||||||||||||||||  ||||    
T  47298040 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaatccatttatttattaatttgctcatataattaaaacagtttc 47297941  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||||    
T  47297940 ggcatgcaactacatcgcgtggagaatcgaatgagcaatgctcattacaatactcagcaactttaccccaatatg 47297866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 2475615 - 2475441
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  2475615 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 2475516  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  2475515 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 2475441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 48385671 - 48385497
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  48385671 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 48385572  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  48385571 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 48385497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 17676802 - 17676628
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||| |||||||||||||| ||| | ||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  17676802 acatcatcttccgaccaactgcttccttgcaaacgcttagtgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 17676703  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||  |||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  17676702 ggcatgcaactgcatcgcgcggagaatcgaatgagcaatgctcattataatactcagcaattttaccccaatatg 17676628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 33166834 - 33167008
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||| | ||||||||||||||||||| ||| ||| ||||||||||| ||||||| |||||||||||||| | ||||||| ||||||| ||||    
T  33166834 acatcatcttcctaccaaccgcttccttgcaaacgcttagcgatttcataagcatcaatccaattatttattactttgcacatataactaaaacggtttc 33166933  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||| |||| || ||| ||  ||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33166934 ggcaagcaattacatcacgcagaggatcgaatgagcaatactcattacaatactcagcaattttaccccaatatg 33167008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 38837179 - 38837005
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    ||||||||||| ||  |||||||||||||||||| ||| ||||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||     
T  38837179 acatcatcttctgacgaaccgcttccttgcaaacgcttagcgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttt 38837080  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||| ||  |||||| ||||||| ||||||||||| |||||||||||||||||||||||||  ||||||||    
T  38837079 ggcatgcagctgcatcgcgcggagaattgaatgagcaatgctcattacaatactcagcaattttacaccaatatg 38837005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 8470899 - 8471051
Alignment:
Q  37 cttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggg 136  Q
    ||||||||||||| ||| ||||  || ||||||| || |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||  ||||| |    
T  8470899 cttccttgcaaacgcttagcgccatcttaagcac-aacccatttatttattaatttgctcatataattaaaacggtttcggcatgcaactacttcgcgcg 8470997  T
Q  137 gagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    ||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  8470998 gagaatcgaatgagcaatactcattacaatactcagcaattatacccaaatatg 8471051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 18318229 - 18318080
Alignment:
Q  31 caaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagat 130  Q
    ||||| ||||||||||||| ||| |||| |||||||||  ||||||||||||||| || ||| ||||||||||||||||  ||||||||||||| || ||    
T  18318229 caaccacttccttgcaaacgcttagcgccttcataagcgtcaatccatttatttagtattttgctcatataattaaaacagtttcggcatgcaattacat 18318130  T
Q  131 cgcggggagaatcgaatgagcaatactcattacaatactcagcaatttta 180  Q
    |||| ||||||||||||||||||| |||||||||||||| | ||||||||    
T  18318129 cgcgcggagaatcgaatgagcaatgctcattacaatacttaacaatttta 18318080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 51522887 - 51523074
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||| | ||||| ||||| ||||||||||||| ||| |||| ||||||| | |||||||||||||||| || ||| ||||||||| ||||||| ||||    
T  51522887 acatcagcctccgaccaaccacttccttgcaaacgcttagcgccttcataaacgccaatccatttatttagtattttgctcatataaataaaacggtttc 51522986  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    ||||||||| || ||| || |||| ||||||| ||||||  ||||||||||||||| |||||||| ||||||||| ||| ||| ||||    
T  51522987 ggcatgcaattacatcacgcggaggatcgaataagcaatgatcattacaatactcatcaattttaccccaatatgcttcacctgtctg 51523074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 48407013 - 48407137
Alignment:
Q  66 agcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaa 165  Q
    |||||||| |||||||||||||| |||  |||||||||||||||| |||||||||||||||| || ||| ||||||||||||||||||| ||| ||||||    
T  48407013 agcaccaacccatttatttattaatttgttcatataattaaaacggtttcggcatgcaactacattgcgcggagaatcgaatgagcaatgctcgttacaa 48407112  T
Q  166 tactcagcaattttaacccaatatg 190  Q
    |||||| |||||||| |||||||||    
T  48407113 tactcaacaattttaccccaatatg 48407137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 10265876 - 10265804
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttatta 88  Q
    ||||||||||| || ||||||||||||||||||| ||| ||||  ||||||||||||| ||||||||||||||    
T  10265876 acatcatcttctgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaacccatttatttatta 10265804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 17958786 - 17958599
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  17958786 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 17958687  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17958686 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 17958599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 634317 - 634502
Alignment:
Q  18 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 117  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  634317 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 634416  T
Q  118 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  634417 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 634502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 6377916 - 6377731
Alignment:
Q  18 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 117  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  6377916 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 6377817  T
Q  118 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6377816 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 6377731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 34841056 - 34841230
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  34841056 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 34841155  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  34841156 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 34841230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 8221751 - 8221925
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||| |||  ||| ||||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| || |    
T  8221751 acatcatcttccgaccaaccgcttccttgaaaatgcttagcgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggttgc 8221850  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8221851 ggcatgcaactacatcgcgcggagaatcgaatgagcaattctcattacaatactcagcaattttaccccaatatg 8221925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 24917105 - 24916931
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||    
T  24917105 acatcatcttccgaccaaccgcttccttgcaaacgtttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaatggtttc 24917006  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||| |||| || ||| || |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  24917005 ggcaagcaattatatcacgcggaggatcgaatgagcaatgctcattgcaatactcagcaattttaccccaatatg 24916931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 18641834 - 18642008
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||| | |||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||    
T  18641834 acatcatcttccaaccaaccgcttctttgcaaacgcttagcgatttcataagcaccaatccatttatttattactttgctcatataattaaaatggtttc 18641933  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||| |||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  18641934 ggcaagcaattacatcacgcggaggatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 18642008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 29952472 - 29952327
Alignment:
Q  59 tttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactc 158  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||  ||||||||||| ||    
T  29952472 tttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttcggcatacaactagatcgcggggataattaaatgagcaatattc 29952373  T
Q  159 attacaatactcagcaattttaaccc-aatatgtttctcctctctg 203  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||||    
T  29952372 attacaatactcagcaaatttacccctaatatgtttctcctctctg 29952327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 24114716 - 24114869
Alignment:
Q  37 cttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggg 136  Q
    |||||||||||||  || || | ||||||||| ||||||||||||||   || ||| ||||||||||||||||| ||| ||||||||| || |||| | |    
T  24114716 cttccttgcaaacgtttagcaccttcataagcgccaatccatttattcggtattttgctcatataattaaaacggttttggcatgcaattacatcgagcg 24114815  T
Q  137 gagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
     ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  24114816 cagaatcgaatgagtaatgctcattacaatactcagcaattttaccccaatatg 24114869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 2212771 - 2212584
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  2212771 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 2212672  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2212671 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 2212584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 46914965 - 46914778
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  ||||    
T  46914965 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacagtttc 46914866  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46914865 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 46914778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 53181919 - 53181732
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  53181919 acatcatcttccgaccaaccgcttccttgcatacgcttagcactttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 53181820  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53181819 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 53181732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 36658099 - 36658268
Alignment:
Q  34 ccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgc 133  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |    
T  36658099 ccgcttccttgcaaacgcttaacgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttctgcatgcaactagatccc 36658198  T
Q  134 ggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||    
T  36658199 ggggagaatcaaatgagcaacactcattacaatactcagcaattttaccccaatatgtttttcctctctg 36658268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 3530751 - 3530577
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  3530751 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 3530652  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  3530651 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 3530577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 3615740 - 3615566
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  3615740 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 3615641  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  3615640 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 3615566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 8994333 - 8994507
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  8994333 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 8994432  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  8994433 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 8994507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 13113111 - 13113285
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  13113111 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 13113210  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  13113211 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 13113285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 33606632 - 33606805
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  33606632 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaatgatttc 33606731  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatat 189  Q
    |||| |||| || ||| || |||| |||||||||| |||  ||||||||||||||| |||||||| ||||||||    
T  33606732 ggcaagcaattacatcacgcggaggatcgaatgagtaatgttcattacaatactcaacaattttaccccaatat 33606805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 16172343 - 16172169
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||  ||||||||||||| |||||||||||||| ||| ||||||| |||| | || ||||    
T  16172343 acatcatcttccgaccaaccgcttccttgcatacgcttagcgccatcataagcaccaacccatttatttattaatttgctcatattattataccggtttc 16172244  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  16172243 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 16172169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 34435025 - 34434838
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||| | ||||||||||||||||||  ||| |||||||||||| || |||||||||||||||||||||| ||||||||||||||||| ||||    
T  34435025 acatcatcttccaaccaaccgcttccttgcaaatgcttagcgctttcataaacatcaatccatttatttattactttgctcatataattaaaacggtttc 34434926  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    ||||||||| || ||| || |||| |||||||  ||||| ||||||||||||||||||||||||| ||||||||| ||| ||| ||||    
T  34434925 ggcatgcaattacatcacgcggaggatcgaatttgcaatgctcattacaatactcagcaattttaccccaatatgcttcacctgtctg 34434838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 28900568 - 28900742
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||  |||||||||||||   |||||||||||| ||| ||||||||||||||| | ||||    
T  28900568 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaacaaatttatttattaatttgctcatataattaaaatggtttc 28900667  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| ||| |  ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  28900668 ggcatgcaactacatcacacggagaatcgaatgagcaatgctcattacaatactcaacaattttaccccaatatg 28900742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 28446824 - 28446998
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||| | ||||| ||||| ||||||||||||| ||| |||| |||||||||  ||||||||||||  | || ||| ||||||||||||||||| ||||    
T  28446824 acatcagcctccgaccaaccacttccttgcaaactcttagcgccttcataagcgtcaatccatttatacagtattttgctcatataattaaaacggtttc 28446923  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
     |||||||| || | | || |||| |||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  28446924 tgcatgcaattacaccacgtggaggatcgaatgagcaatgctcattacaatactcaacaattttaccccaatatg 28446998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 17469061 - 17469248
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  17469061 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 17469160  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17469161 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 17469248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 25788196 - 25788009
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  25788196 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 25788097  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25788096 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 25788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 33935822 - 33936009
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  33935822 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 33935921  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  33935922 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcaacaattttaccctaatatgtttctcctctctg 33936009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 25830151 - 25829966
Alignment:
Q  18 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 117  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  25830151 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 25830052  T
Q  118 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25830051 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 25829966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 42598851 - 42598664
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  42598851 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 42598752  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42598751 agcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 42598664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 47146918 - 47147105
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  47146918 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 47147017  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47147018 ggcaggcaactagatcgcggggagaatcgaatgagctatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 47147105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 6045824 - 6045650
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  6045824 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 6045725  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  6045724 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 6045650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 30415952 - 30415778
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  30415952 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 30415853  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  30415852 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 30415778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 42563557 - 42563731
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  42563557 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 42563656  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  42563657 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 42563731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 43475038 - 43475212
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    ||||||| |||||| ||||||||||||||||||| ||| | ||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  43475038 acatcattttccgaccaaccgcttccttgcaaacgcttagtgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 43475137  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  43475138 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 43475212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 50019643 - 50019784
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    ||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  50019643 acatcatcttcagaccaaccgcttccttgcaaacgcttagcgctttcataagcaccaatccatttatttattactttgttcatataattaaaacggtttc 50019742  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatact 157  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50019743 ggcatgcaactagatcgcggggagaatcgaatgagcaatact 50019784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 10425148 - 10424974
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| |  ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  10425148 acatcatcttccgaccaaccgcttccttgcatatgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 10425049  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  10425048 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 10424974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 26157591 - 26157417
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  26157591 acatcatcttccgaccaaccgcttccttgcagacgcttagcactttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 26157492  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||| |||| || ||| || |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  26157491 ggcaagcaattatatcacgcggaggatcgaatgagcaatgctcattgcaatactcagcaattttaccccaatatg 26157417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 30689315 - 30689122
Alignment:
Q  18 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 117  Q
    |||||||||||| ||||| ||||||||||||| ||| |||   |||||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  30689315 atcatcttccgaccaaccacttccttgcaaacgcttagcggcatcataagcaccaatccatttatttattactttgcttatataattaaaatgatttcgg 30689216  T
Q  118 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctct-gcttctcc 210  Q
    |||||||||||||| || |||||||| ||||||| |||||||||||||||||||||||||| | |||||||| |||| || |||| ||||||||    
T  30689215 catgcaactagatcccgcggagaatcaaatgagccatactcattacaatactcagcaatttcaccccaatatatttcacccctctagcttctcc 30689122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 33188560 - 33188387
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  33188560 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 33188461  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatat 189  Q
    |||||||||||  |||||| |||||||||||| ||||||  |||||||||||||||||||||||| ||||||||    
T  33188460 ggcatgcaactgcatcgcgcggagaatcgaattagcaatgttcattacaatactcagcaattttaccccaatat 33188387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 4874594 - 4874420
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||| ||| ||||||||||||||||||| ||| || |  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  4874594 acatcatctttcgaccaaccgcttccttgcaaacgcttagcaccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 4874495  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||   ||||| |||||||||||||||| || |||||||||||||||| ||||||||||||||||||    
T  4874494 ggcatgcaactgagtcgcgcggagaatcgaatgagcgatgctcattacaatactcaacaattttaacccaatatg 4874420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 51429519 - 51429662
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    ||||||| |||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||  |||||||||||||||| ||||    
T  51429519 acatcattttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgttcatataattaaaacggtttc 51429618  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactca 159  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  51429619 ggcaggcaactagatcgcgtggagaatcgaatgagcaatactca 51429662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 4852860 - 4852727
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||| ||| ||||||||||||||||||| ||| || |  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  4852860 acatcatctttcgaccaaccgcttccttgcaaacgcttagcaccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 4852761  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatga 149  Q
    |||||||| ||   ||||| ||||||||||||||    
T  4852760 ggcatgcacctgagtcgcgcggagaatcgaatga 4852727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 21227770 - 21227948
Alignment:
Q  25 tccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaa 124  Q
    ||||| |||||||||||||| ||||  ||   ||| |||||||| ||||||||||||  || || |||  ||||||||||| |||| ||||| |||||||    
T  21227770 tccgaccaaccgcttccttgaaaacgattaatgctatcataagcgccaatccatttacctagtattttgttcatataattataacggtttcgacatgcaa 21227869  T
Q  125 ctagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    ||  |||| | |||| ||| |||||||||| |||||||||||| ||| ||||| || ||||||||||||| ||| ||||    
T  21227870 ctccatcgtgcggaggatcaaatgagcaattctcattacaataatcaacaattctaccccaatatgtttcacctttctg 21227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 51429654 - 51429694
Alignment:
Q  163 caatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  51429654 caatactcagcaattttaccccaatatgtttctcctctctg 51429694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 33751209 - 33751259
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataa 66  Q
    ||||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  33751209 acatcatcttctgaccaaccgcttccttgcaaacgcttagcgctttcataa 33751259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 50019786 - 50019818
Alignment:
Q  171 agcaattttaacccaatatgtttctcctctctg 203  Q
    |||||||||| ||||||||||||||||||||||    
T  50019786 agcaattttaccccaatatgtttctcctctctg 50019818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 4e-80; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 35101042 - 35101228
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  35101042 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 35101141  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctct 202  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35101142 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctct 35101228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 13816684 - 13816871
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  13816684 acatcatcttccgaccaaccgcttccttgcattcgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 13816783  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13816784 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttacccaaatatgtttctcctctctg 13816871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 26749373 - 26749200
Alignment:
Q  29 atcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactag 128  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  26749373 atcaatcgcttccttgcaaacgtttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttcggcatgcaactag 26749274  T
Q  129 atcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  26749273 atcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttacaccaatatgtttctcctctct 26749200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 5213430 - 5213617
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    ||||||| |||||| ||||||||| |||||| || ||| |||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  5213430 acatcattttccgaccaaccgcttacttgcatacgcttagcgctttcataagccccaatccatttatttattattttgctcgtataattaaaacggtttc 5213529  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5213530 ggcaggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 5213617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 38205712 - 38205538
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  38205712 acatcatcttccgatcaaccgcttccttgcaaacgcttagctttttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 38205613  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||| |||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  38205612 ggcaagcaattacatcacgcggaggatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 38205538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 1955775 - 1955601
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  1955775 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 1955676  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  1955675 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 1955601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 15056194 - 15056368
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  15056194 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 15056293  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||    
T  15056294 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcaacaattttaccccaatatg 15056368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 30530118 - 30529944
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    ||||||||||||||   |||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  30530118 acatcatcttccgacttaccgtttccttgcaaacgcttggcgttttcataagcaccaatccattcatttattactttgctcatataattaaaacggtttc 30530019  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||| |||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30530018 ggcaagcaattacatcacgcggaggatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 30529944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 17744217 - 17744395
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||| ||| ||||||||| ||| |||   ||||||||||||| |||||||||||||||||| ||||||||||||||||  ||      
T  17744217 acatcatcttccgaccaaccactttcttgcaaacgcttagcgacatcataagcaccaacccatttatttattactttgctcatataattaaaacagttct 17744316  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttc 194  Q
    ||||||||||||||||  | |||||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  17744317 ggcatgcaactagatccagtggagaatcaaatgagccatactcattacaatactcagcaattttaccctaatatgtttc 17744395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 5735767 - 5735849
Alignment:
Q  121 gcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  5735767 gcaacttgatcgcggggagaatcaaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcccctctg 5735849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 1634033 - 1633962
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttatt 87  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1634033 acatcatcttccgaccaaccgcttccttgcaaacacttagcgctttcataagcaccaatccatttatttatt 1633962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 27392271 - 27392309
Alignment:
Q  161 tacaatactcagcaattttaacccaatatgtttctcctc 199  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  27392271 tacaatactcagcaattttaccccaatatgtttcacctc 27392309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 22193863 - 22194048
Alignment:
Q  18 atcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcgg 117  Q
    |||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  22193863 atcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcgg 22193962  T
Q  118 catgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22193963 caggcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 22194048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 36521076 - 36521250
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  36521076 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 36521175  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  36521176 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 36521250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 32127735 - 32127561
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  32127735 acatcatcttccgaccaaccgcttccttgcaaacgcttaacactttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 32127636  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||| |||| || ||| || |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  32127635 ggcaagcaattatatcacgcggaggatcgaatgagcaatgctcattgcaatactcagcaattttaccccaatatg 32127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 22659494 - 22659666
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || |||  |||  ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||    
T  22659494 acatcatcttccgaccaaccgcttccttgcatacgcttaacgccatcataagcaccaacccatttatttattaatttgctcatataattaaaacggtttc 22659593  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaata 188  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||| |||||||| |||||||| |||||||    
T  22659594 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcattaaaatactcaacaattttaccccaata 22659666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 26814712 - 26814886
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||| |||||||||||| ||| || |||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  26814712 acatcatcttccgaccaaccgtttccttgcaaacgcttagcactttcataagcatcaatccatttatttattactttgctcatataattaaaacggtttc 26814811  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||| |||| || ||| || ||||  ||||||||||||| |||||| ||||||| |||||||||| |||||||||    
T  26814812 ggcaagcaattatatcacgcggagggtcgaatgagcaatgctcattgcaatacttagcaattttaccccaatatg 26814886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 40301313 - 40301220
Alignment:
Q  97 atataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| | |||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  40301313 atataattaaaatggtttcggcatgcaactacatcgcacggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 40301220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 1940259 - 1940162
Alignment:
Q  96 catataattaaaacgatttcggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttc 194  Q
    ||||||||||||||| ||||| ||| |||||  |||||| |||| |||||||||  ||| |||||||| | ||||| ||||| || | |||||||||||    
T  1940259 catataattaaaacggtttcgacattcaacttcatcgcgcggaggatcgaatgataaatgctcattac-acactcaacaattctacctcaatatgtttc 1940162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 31012491 - 31012330
Alignment:
Q  42 ttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagatcgcggggagaa 141  Q
    ||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  31012491 ttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttcggcaggcaactagatcgcggggagaa 31012392  T
Q  142 tcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31012391 tcgaatgagcaatactcattacaatactcagcaattttaccccaatatgtttctcctctctg 31012330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 32973846 - 32973672
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  32973846 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 32973747  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  32973746 ggcatgcaactatatcgcgcggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 32973672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 27945201 - 27945375
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  27945201 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 27945300  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  27945301 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 27945375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 40891371 - 40891545
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  40891371 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 40891470  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  40891471 ggcatgcaactacatcgcgcggagaatcgaatgagcaatgctcgttacaatactcagcaattttaccccaatatg 40891545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 30646353 - 30646179
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||  ||||||||||||| |||||||||||||  ||| ||||||||||||||||  ||||    
T  30646353 acatcatcttccgaccaaccgcttccttgcaaacgcttagcgccatcataagcaccaacccatttatttattcatttgctcatataattaaaacagtttc 30646254  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30646253 ggcatgcaactacatcgagcggagaatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 30646179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 4579654 - 4579829
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  4579654 acatcatcttccgaccaaccgcttccttgcatacgcttagcgctttcataagcaccaatccatttatttattattttgctcatataattaaaacggtttc 4579753  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    ||||  ||||||||||||||||||||||||||||            ||||||||||||||||||| ||||||||||||||||||||||    
T  4579754 ggcagacaactagatcgcggggagaatcgaatga------------acaatactcagcaattttaccccaatatgtttctcctctctg 4579829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 29617013 - 29616839
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    ||||||||||||||  ||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||| |||  |||||||||||||||| ||||    
T  29617013 acatcatcttccgacaaaccgcttccttgcatacgcttagcgctatcataagcaccaacccatttatttattaatttgttcatataattaaaacggtttc 29616914  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||||||||||| |||||  |||||||||||||| |||| ||| ||||||||||||| ||||||| || ||||||    
T  29616913 ggcatgcaactacatcgcacggagaatcgaatgatcaatgctcgttacaatactcaggaattttacccaaatatg 29616839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 34710648 - 34710724
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattacttt 92  Q
    |||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||    
T  34710648 acatcatcttccgaccaaccgcttccttgcaaacgcttagcactttcataagcaccaatccatttatttattacttt 34710724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 21365263 - 21365310
Alignment:
Q  156 ctcattacaatactcagcaattttaacccaatatgtttctcctctctg 203  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  21365263 ctcattacaatactcagcaattttaccccaatatgtttcacctatctg 21365310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 105423 - 105597
Alignment:
Q  16 acatcatcttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttc 115  Q
    |||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  105423 acatcatcttccgaccaaccgcttccttgcaaacgcttagcactttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttc 105522  T
Q  116 ggcatgcaactagatcgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    |||| |||| || ||| || |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  105523 ggcaagcaattatatcacgcggaggatcgaatgagcaatgctcattgcaatactcagcaattttaccccaatatg 105597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 110680 - 110521
Alignment:
Q  31 caaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaactagat 130  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| || ||    
T  110680 caaccgcttccttgcaaaagcttagcgctttcataagcaccaatccatttatttattactttgctcatataattaaaacggtttcggcaagcaattacat 110581  T
Q  131 cgcggggagaatcgaatgagcaatactcattacaatactcagcaattttaacccaatatg 190  Q
    | || |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  110580 cacgcggaggatcgaatgagcaatgctcattacaatactcagcaattttaccccaatatg 110521  T

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Target: scaffold0007 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 166804 - 166670
Alignment:
Q  25 tccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccatttatttattactttactcatataattaaaacgatttcggcatgcaa 124  Q
    ||||| ||||||||||||||||||| ||| ||||| |||||||| ||||||||||||   |||| |    ||||||||||| |||| |||||||||||||    
T  166804 tccgaccaaccgcttccttgcaaacgcttagcgctatcataagcgccaatccatttacccattattcagttcatataattataacggtttcggcatgcaa 166705  T
Q  125 ctagatcgcggggagaatcgaatgagcaatactca 159  Q
    ||  |||||| |||| ||| ||||| |||||||||    
T  166704 ctccatcgcgcggaggatcaaatgaacaatactca 166670  T

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Target: scaffold0658 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 6605 - 6549
Alignment:
Q  24 ttccgatcaaccgcttccttgcaaacacttggcgctttcataagcaccaatccattt 80  Q
    ||||||||||||| ||| |||||||  ||| |||| |||||||||||||||||||||    
T  6605 ttccgatcaaccgtttcattgcaaaagcttagcgccttcataagcaccaatccattt 6549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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