View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12855_high_13 (Length: 271)
Name: NF12855_high_13
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12855_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 5391266 - 5391011
Alignment:
| Q |
1 |
catggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagca |
100 |
Q |
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| T |
5391266 |
catggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagca |
5391167 |
T |
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| Q |
101 |
tgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391166 |
tgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggt |
5391067 |
T |
|
| Q |
201 |
gcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgtttt |
256 |
Q |
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| T |
5391066 |
gcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgtttt |
5391011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 5399985 - 5399730
Alignment:
| Q |
1 |
catggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagca |
100 |
Q |
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| T |
5399985 |
catggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagca |
5399886 |
T |
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| Q |
101 |
tgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggt |
200 |
Q |
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| T |
5399885 |
tgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggt |
5399786 |
T |
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| Q |
201 |
gcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgtttt |
256 |
Q |
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| T |
5399785 |
gcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgtttt |
5399730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 5394804 - 5394549
Alignment:
| Q |
1 |
catggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagca |
100 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
5394804 |
catggttcattaatcgaccacaccccatctttggattttcaccttatagcatgatgaacgtcattggcacgctttgtgtttacgccgcaatttgcaagca |
5394705 |
T |
|
| Q |
101 |
tgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggt |
200 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5394704 |
tgagggtcttcctttaaggtttcctggctcaaaaggtgcatgggagtgttattctactgcttcagatgctaatttaatagccgaacaacatatttggggt |
5394605 |
T |
|
| Q |
201 |
gcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgtttt |
256 |
Q |
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|||| ||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
5394604 |
gcagcggatcctaacgcaaagaatgaagcattcaattgcagtaatggtgatgtttt |
5394549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 3819103 - 3818873
Alignment:
| Q |
27 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctg |
126 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| || || ||||| | |
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| T |
3819103 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccag |
3819004 |
T |
|
| Q |
127 |
gctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatga |
226 |
Q |
| |
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| | || || ||||| ||| | | ||||| ||||| |||| || | |||||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
3819003 |
ggactaagttagcttgggagaattactacatggcttctgatgcagatttgattgctgaacaacatatttgggctgcagtggatccttatgctaagaatga |
3818904 |
T |
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| Q |
227 |
agcattcaactgcagcaatggcgatgttttt |
257 |
Q |
| |
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| T |
3818903 |
agcattcaattgtagtaatggtgatgttttt |
3818873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 47338774 - 47339004
Alignment:
| Q |
27 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctg |
126 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| || || ||||| | |
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| T |
47338774 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccag |
47338873 |
T |
|
| Q |
127 |
gctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatga |
226 |
Q |
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| | || || ||||| ||| | | ||||| |||||| |||| || | || ||||||||||||| ||||||||||||| |||| |||||||| |
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| T |
47338874 |
ggactaagttagcttgggagaattactacatggcttctgatgctgatttgattgctgagcaacatatttgggctgcagtggatccttatgctaagaatga |
47338973 |
T |
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| Q |
227 |
agcattcaactgcagcaatggcgatgttttt |
257 |
Q |
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||||||||| || || ||||| ||||||||| |
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| T |
47338974 |
agcattcaattgtagtaatggtgatgttttt |
47339004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 47347233 - 47347474
Alignment:
| Q |
16 |
gaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccatt |
115 |
Q |
| |
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|||| |||||||| ||||||||||||||||| || ||||||| ||| |||| || ||||||||||| ||||||||||||||||| || ||| |||| || |
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| T |
47347233 |
gacctcaagttatatttggattttcaccttatagtttgatgaatctcgttggtacactttgtgtttatgctgcaatttgcaagcacgaaggtgttccgtt |
47347332 |
T |
|
| Q |
116 |
aaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaat |
215 |
Q |
| |
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| ||||| || |||| | || ||||| | |||||| ||||| ||||| |||| || | || ||||||||||||| |||||||||||| || |
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| T |
47347333 |
gaaatttcccggtacaaagggagcttgggagtcttattctgtggcttctgatgcggatttgattgcagagcaacatatttgggccgcagtggatccttat |
47347432 |
T |
|
| Q |
216 |
gcaaagaatgaagcattcaactgcagcaatggcgatgttttt |
257 |
Q |
| |
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| T |
47347433 |
gctaagaacgaagcttttaactgtagcaatggtgatgttttt |
47347474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 47349783 - 47349859
Alignment:
| Q |
27 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatga |
103 |
Q |
| |
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||||||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||| |
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| T |
47349783 |
atctttggattctcaccttacagtttgatgaatgttgttggcacgctttgcctttacgctgcaatttgcaagcatga |
47349859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 47349942 - 47350013
Alignment:
| Q |
186 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttt |
257 |
Q |
| |
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||||| ||||||| |||||||||| || |||| ||||||||||| ||||| || |||||||| ||||||||| |
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| T |
47349942 |
caacacatttgggctgcagtggatacttatgctaagaatgaagcgttcaattgtagcaatggtgatgttttt |
47350013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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