View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12855_low_10 (Length: 329)

Name: NF12855_low_10
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12855_low_10
NF12855_low_10
[»] chr6 (14 HSPs)
chr6 (17-322)||(6505496-6505801)
chr6 (48-294)||(6526419-6526662)
chr6 (38-322)||(6515961-6516245)
chr6 (19-126)||(6465351-6465458)
chr6 (47-322)||(13035602-13035874)
chr6 (57-232)||(6520514-6520695)
chr6 (47-124)||(6473098-6473175)
chr6 (19-124)||(6528211-6528316)
chr6 (50-214)||(6496722-6496886)
chr6 (24-214)||(6461786-6461976)
chr6 (48-112)||(6523440-6523504)
chr6 (161-322)||(6472903-6473061)
chr6 (243-322)||(1841749-1841828)
chr6 (29-123)||(6457401-6457495)
[»] chr7 (2 HSPs)
chr7 (46-232)||(9665246-9665438)
chr7 (19-127)||(4046250-4046358)
[»] chr4 (1 HSPs)
chr4 (46-232)||(13536270-13536462)
[»] chr1 (3 HSPs)
chr1 (61-112)||(35231500-35231551)
chr1 (49-112)||(35243140-35243203)
chr1 (194-222)||(35231399-35231427)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 6505496 - 6505801
Alignment:
Q  17 ccatcattagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6505496 ccatcattagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggttt 6505595  T
Q  117 ccttcaaaaaacttctaaccttttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaa 216  Q
    ||||||||||  |||| || |||||||| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  6505596 ccttcaaaaagtttcttactttttcaatagcatcaaagaagaaaacctcttcagctatcaatgcaagcctagctgctcttgcaattaattttccataaaa 6505695  T
Q  217 ataagacgatgttgtttgttttgttgcagatgagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacct 316  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6505696 ataagacgattttgtttgttttgttgcagatgagtttaaaccttcaacatctttagaaagtgatgaaacaatttcattgcgtgattcgtcttttacacct 6505795  T
Q  317 ttgctt 322  Q
    ||||||    
T  6505796 ttgctt 6505801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 294
Target Start/End: Original strand, 6526419 - 6526662
Alignment:
Q  48 ctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttctaaccttttcaatggc 147  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||  |||  |    
T  6526419 ctccccattttttatcataaagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaatactttctaacttttggaatcac 6526518  T
Q  148 ttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtttgttttgttgcagat 247  Q
     |||| |||  ||||||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||| ||| |||||| | |||||   |||    
T  6526519 atcaaggaaacaaacctcttccgctatcaatgcaagtcttgcagctcttgcaatcaattttccataaaaataagatgattttgtttttattgtt---gat 6526615  T
Q  248 gagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatc 294  Q
    || || |   |||||||||| ||| |||||| |||||||||||||||    
T  6526616 gaattcagtccttcaacatccttacaaagtgctgaaacaatttcatc 6526662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 38 - 322
Target Start/End: Complemental strand, 6516245 - 6515961
Alignment:
Q  38 gtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttctaacct 137  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||| || |    
T  6516245 gtaataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttctgactt 6516146  T
Q  138 tttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtttgttt 237  Q
    ||| ||| || |||| ||| ||||  ||||| |||| |||||| | ||| ||||||||||||||||||| |||||| || ||||| || ||  ||  | |    
T  6516145 tttgaatagcgtcaacgaaaaaaaattcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccatagaagtaagatgaagtaattgatgt 6516046  T
Q  238 tgttgcagatgagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgctt 322  Q
    | |||| ||||| |||||| |||||||||||||  |||| || ||||||||||||||  ||||||| ||||||| ||||||||||    
T  6516045 tattgctgatgaatttaaaccttcaacatcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgctt 6515961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 6465351 - 6465458
Alignment:
Q  19 atcattagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttcc 118  Q
    |||||||||||||||||  |||| || |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6465351 atcattagacccttgtttggtaacaattcctccccattttccatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatagtttcc 6465450  T
Q  119 ttcaaaaa 126  Q
    ||||||||    
T  6465451 ttcaaaaa 6465458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 47 - 322
Target Start/End: Complemental strand, 13035874 - 13035602
Alignment:
Q  47 cctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-taaccttttcaatg 145  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||||| | ||  ||  |||     
T  13035874 cctccccattttttatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatggattccttc-aagtacttcttcacaattggaatt 13035776  T
Q  146 gcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtttgttttgttgcag 245  Q
    || |||| | |    |||||||| | || |||||| | ||| || |||||||| ||||||||||||||||| ||||| ||||| ||   | || | |  |    
T  13035775 gcatcaaggtaattcacctcttcagttatcaatgctaaccttgcagctcttgctatcaattttccataaaagtaagatgatgtcgt---tgttatcggtg 13035679  T
Q  246 atgagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgctt 322  Q
    |||| |||| | ||||||||||||| ||||| | |||||||||||  ||  ||||||| ||||||||||||||||||    
T  13035678 atgactttagaccttcaacatctttcgaaagagctgaaacaattttgtcatgtgattcttcttttacacctttgctt 13035602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 232
Target Start/End: Complemental strand, 6520695 - 6520514
Alignment:
Q  57 ttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaa------acttctaaccttttcaatggcttc 150  Q
    |||||||||||||||| |||||| || |||||||||||||||||||||||||||| ||||||||||| ||      | |  ||||||||  |||    ||    
T  6520695 ttttatcatatagaaaaccattttcactaaaagttccatcaagccaaggctcaatagtttccttcaagaacatcttaatcttaacctttggaatcaaatc 6520596  T
Q  151 aaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtt 232  Q
    ||||| |||||||||||| ||||  | ||| | ||| || ||||| |||||||| ||||||||| |||||||||||||||||    
T  6520595 aaagacgaaaacctcttcagctattattgctaaccttgcagctctagcaatcaactttccataagaataagacgatgttgtt 6520514  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 6473175 - 6473098
Alignment:
Q  47 cctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaa 124  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||  ||| ||||||||||    
T  6473175 cctccccattttttatcatagagaaatccatttccattaaatgttccatcgagccaaggctcggtggattccttcaaa 6473098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 6528211 - 6528316
Alignment:
Q  19 atcattagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttcc 118  Q
    |||| |||| |||||||  |||||||  |||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||  | |||    
T  6528211 atcagtagagccttgttttgtaataatccctccccattttttatcatagagaaatccattacctttgaaagttccatcaagccaaggctcaatcatctcc 6528310  T
Q  119 ttcaaa 124  Q
    ||||||    
T  6528311 ttcaaa 6528316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 6496722 - 6496886
Alignment:
Q  50 ccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-taaccttttcaatggct 148  Q
    |||||||| | ||| | |||||||||||| ||||| ||||||||||| | |||||||||||||||||| ||| ||||||||| ||||||||  |||  |     
T  6496722 ccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttc-aaaaacttcttaacctttggaatcaca 6496820  T
Q  149 tcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataa 214  Q
    || ||| |  |||||||||| |||| |||||||| ||| || || ||| |||||||||| ||||||    
T  6496821 tctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataa 6496886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 6461976 - 6461786
Alignment:
Q  24 tagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 123  Q
    ||||||||||||  |||| ||  || |||||||| | ||| | |||||||||||| ||||| ||||||||||| | ||||||||||||||||| |||  |    
T  6461976 tagacccttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggttt-ctttta 6461878  T
Q  124 aaaacttc-taaccttttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataa 214  Q
    |||||||| ||||||||  |||  | || ||| |  |||||||||| |||| |||||||| ||| || || ||| |||||||||| ||||||    
T  6461877 aaaacttcttaacctttggaatcacatctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataa 6461786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 6523440 - 6523504
Alignment:
Q  48 ctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg 112  Q
    |||||||||| | |||||||||||||||||||   || |||||||||||||||||||||||||||    
T  6523440 ctccccatttctgatcatatagaaatccattttatttgaaagttccatcaagccaaggctcaatg 6523504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 322
Target Start/End: Complemental strand, 6473061 - 6472903
Alignment:
Q  161 acctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtttgttttgttgcagatgagtttaaatctt 260  Q
    |||||||| |||| |||||| | ||| || || ||||| ||||||||||||||||| ||||| |||| ||||  | | | ||   |||| |||| |   |    
T  6473061 acctcttcggctatcaatgctaacctcgcagcccttgctatcaattttccataaaagtaagatgatgctgttgttatcggtg---atgactttagactct 6472965  T
Q  261 caacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgctt 322  Q
    |||||||||| ||||| | |||||||||||| ||  ||||||| ||||||||||||||||||    
T  6472964 caacatcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgctt 6472903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 1841828 - 1841749
Alignment:
Q  243 cagatgagtttaaatcttcaacatctttagaaagtgatgaaacaatttcatcgcgtgattcgtcttttacacctttgctt 322  Q
    |||||||||| ||| ||||||||| |||  |||| | |||||||||||||||  |  |||| ||||||||||||||||||    
T  1841828 cagatgagttcaaaccttcaacatatttcaaaagagctgaaacaatttcatcatgaaattcttcttttacacctttgctt 1841749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 6457401 - 6457495
Alignment:
Q  29 ccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 123  Q
    |||||||  ||||| | |||||||||||||  |||||| ||||| |||||| | |||||||||||||  | ||| ||||| || |||||||||||    
T  6457401 ccttgtttggtaatgattcctccccattttccatcataaagaaaaccattttcgttaaaagttccattcaaccatggctcgatcgtttccttcaa 6457495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 9665438 - 9665246
Alignment:
Q  46 tcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-------taacctt 138  Q
    |||||||||||| | |||||| |||||||||||| | || ||||||||||||| ||| || ||||| ||||| ||| |||||||||       |||| ||    
T  9665438 tcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttc-aaaaacttcttaatcttaacatt 9665340  T
Q  139 ttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtt 232  Q
    |  ||     |||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  9665339 tggaaccatatcaaagaaaaaaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgtt 9665246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 4046250 - 4046358
Alignment:
Q  19 atcattagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttcc 118  Q
    |||||||  ||||||||||||||  | ||| |||||  |||| ||||| | ||| ||||| || || ||| ||||||| | ||| |||||||| ||||||    
T  4046250 atcattaatcccttgttgagtaactaatccaccccaacttttttcatagaaaaaaccattccctttgaaatttccatccaaccatggctcaatagtttcc 4046349  T
Q  119 ttcaaaaaa 127  Q
    |||||||||    
T  4046350 ttcaaaaaa 4046358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 13536462 - 13536270
Alignment:
Q  46 tcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-------taacctt 138  Q
    |||||||||||| | |||||| |||||||||||| | || ||||||||||||| ||| || ||||| ||||| ||| |||||||||       |||| ||    
T  13536462 tcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttc-aaaaacttcttaatcttaacatt 13536364  T
Q  139 ttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaataagacgatgttgtt 232  Q
    |  ||     |||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  13536363 tggaaccatatcaaagaaaaaaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgtt 13536270  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 35231551 - 35231500
Alignment:
Q  61 atcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg 112  Q
    ||||||||||||||||||| | || | || ||||||||||||||||||||||    
T  35231551 atcatatagaaatccattttctttgatagctccatcaagccaaggctcaatg 35231500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 35243203 - 35243140
Alignment:
Q  49 tccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg 112  Q
    |||||||| || |||||||| |||| ||||| | || |||||||||||||||||| ||||||||    
T  35243203 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatg 35243140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 35231427 - 35231399
Alignment:
Q  194 cttgcaatcaattttccataaaaataaga 222  Q
    |||||||||||||||||||||||||||||    
T  35231427 cttgcaatcaattttccataaaaataaga 35231399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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