View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12855_low_12 (Length: 275)
Name: NF12855_low_12
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12855_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 53721886 - 53721628
Alignment:
| Q |
18 |
tcttgatctctcaagtttcatttcacgtgggtttctcaaagtgttgcttacacannnnnnn-ggcattctgtccacctcctccacccttagtttccttga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
53721886 |
tcttgatctctcaagtttcatttcacgtgggtttctcaaagtgttgcttacacattttttttggcattctgtccacctcctccacccttagtttacttga |
53721787 |
T |
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| Q |
117 |
tcgatatcatcactaatttgcgaccggaggtggacaaactgtcaacagagttgtgttggcttctctttgtaaaatcttcctgatatttttatatatacac |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53721786 |
tcgatctcatcactaatttgcgaccggaggtggacaaactgtcaacagagttgtgttggcttctctttgtaaaatcttcctgatatttttatatatacac |
53721687 |
T |
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| Q |
217 |
atctcaatcaattcattctttttacctcgcatattagctgccatgccaaactcctgtgg |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53721686 |
atctcaatcaattcattctttttacctcgcatattagctgccatgccaaactcctgtgg |
53721628 |
T |
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