View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12855_low_14 (Length: 253)
Name: NF12855_low_14
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12855_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 29461274 - 29461494
Alignment:
| Q |
15 |
caaaggatacaacatggatgagagtgatgaggaagcatattgtggccttaatagaggaagtttcttagcatgggaagatctaagagttatgttgccaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461274 |
caaaggatacaacatggatgagagtgatgaggaagcatattgtggccttaatagaggaagtttcttagcatgggaagatctaagagttatgttgccaaat |
29461373 |
T |
|
| Q |
115 |
tttgggaaaggaccaaccaagaggttacttaatgggttaaatggttttgctgagcctggtagaatcatggctattatgggtccttctggctctggaaaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461374 |
tttgggaaaggaccaaccaagaggttacttaatgggttaaatggttttgctgagcctggtagaatcatggctattatgggtccttctggctctggaaaat |
29461473 |
T |
|
| Q |
215 |
ccactttgcttgatacacttg |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29461474 |
ccactttgcttgatacacttg |
29461494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 29426069 - 29426227
Alignment:
| Q |
77 |
tcttagcatgggaagatctaagagttatgttgccaaattttgggaaaggaccaaccaagaggttacttaatgggttaaatggttttgctgagcctggtag |
176 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
29426069 |
tcttagcatgggaggatgtaagagttatgttgccaaattttgggaaaggaccaactaaaaggttacttaatggtcttaatggttttgctgagcctggtag |
29426168 |
T |
|
| Q |
177 |
aatcatggctattatgggtccttctggctctggaaaatccactttgcttgatacacttg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29426169 |
aatcatggctattatgggtccttctggctctggaaaatccactttgcttgatacacttg |
29426227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 29476603 - 29476656
Alignment:
| Q |
175 |
agaatcatggctattatgggtccttctggctctggaaaatccactttgcttgat |
228 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||| | |||||| |
|
|
| T |
29476603 |
agaatcatggctattatgggtccatctggttctggaaaatctactcttcttgat |
29476656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 37290237 - 37290273
Alignment:
| Q |
182 |
tggctattatgggtccttctggctctggaaaatccac |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37290237 |
tggctattatgggtccatctggctctggaaaatccac |
37290273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 36068327 - 36068412
Alignment:
| Q |
133 |
aagaggttacttaatgggttaaatggttttgctgagcctggtagaatcatggctattatgggtccttctggctctggaaaatccac |
218 |
Q |
| |
|
|||| ||||||| |||| ||| |||||||||||| |||||||| ||||||||| |||||||||||||||||| ||| ||| |||| |
|
|
| T |
36068327 |
aagaagttacttgatggtgtaactggttttgctgaacctggtaggatcatggctgttatgggtccttctggctgtggcaaaaccac |
36068412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University