View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12855_low_16 (Length: 238)
Name: NF12855_low_16
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12855_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 38707309 - 38707529
Alignment:
| Q |
2 |
attataccctcgtatgcactgccttcttaacatctattattctcctttattttaattattgatgcattgtaggtgcgaaaagaacttgaaaatttaagag |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38707309 |
attataccctcgtatgcactgccttcgtaacatctattattctcctttattttaattattgatgcattgtaggtgcaaaaagaacttgaaaatttaagag |
38707408 |
T |
|
| Q |
102 |
acaaacttcaacatctgaagatgcagtataacaaagagaaagagaggattgatgagattcgaaggctgaaacatacgtgaagagctcctctttgcactac |
201 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707409 |
acaagcttcgacatctgaagatgcagtataacaaagagaaagagaggattgatgagatttgaaggctgaaacatacgtgaagagctcctctttgcactac |
38707508 |
T |
|
| Q |
202 |
aggaggctgagaggtggtatg |
222 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38707509 |
aggaggctgagaggtggtatg |
38707529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 10045499 - 10045704
Alignment:
| Q |
20 |
ctgccttcttaacatctattattctcctttattttaattattgatg-cattgtaggtgcgaaaagaacttgaaaatttaagagacaaacttcaacatctg |
118 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||| |||||||||||||| ||||| | |||| |
|
|
| T |
10045499 |
ctgccttcgtaacatccattattctcctttattctaattattgatgtcattgcaggtgcggaaagaacttgacaatttaagagacaagcttcagcctctg |
10045598 |
T |
|
| Q |
119 |
aagatgcagtataacaaagagaaagagaggattgatgagattcgaaggctgaaac--atacgtgaagagctcctctttgcactacaggaggctgagaggt |
216 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10045599 |
aagatgaagtatatcaaagagaaagagaggattgatgagattcgaagtctgaaacagaaacgtgaagagctcctctttgcactacaagaggctgagaggc |
10045698 |
T |
|
| Q |
217 |
ggtatg |
222 |
Q |
| |
|
|||||| |
|
|
| T |
10045699 |
ggtatg |
10045704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 45467431 - 45467557
Alignment:
| Q |
98 |
agagacaaacttcaacatctgaagatgcagtataacaaagagaaagagaggattgatgagattcgaaggctgaa--acatacgtgaagagctcctctttg |
195 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
45467431 |
agagacaagcttcaacctctgaagatgaagtatagtaaagagaaagagaggattgatgagattcgaaggctgaagcagaaacgtgaagagctcctctttg |
45467530 |
T |
|
| Q |
196 |
cactacaggaggctgagaggtggtatg |
222 |
Q |
| |
|
||||||||||||| |||||| |||||| |
|
|
| T |
45467531 |
cactacaggaggcagagaggcggtatg |
45467557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 42450408 - 42450325
Alignment:
| Q |
134 |
aaagagaaagagaggattgatgagattcgaaggctgaa--acatacgtgaagagctcctctttgcactacaggaggctgagagg |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| | | |||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
42450408 |
aaagagaaagtgaggattgatgagattcaaaggctgaagcagaaacgtgaagagcttatcttgtctctacaggaggctgagagg |
42450325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University