View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12855_low_17 (Length: 235)
Name: NF12855_low_17
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12855_low_17 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 31453313 - 31453107
Alignment:
| Q |
18 |
tatctgagaattatcgtctaattccttgtttcaaaccctaaccctaaaaaattaagaaatcgaaataacgaagaaagggaaaaggggggtttacctgaat |
117 |
Q |
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| T |
31453313 |
tatctgagaattatcgtctaattccttgtttcaaaccctaaccctaaaaaataaagaaatcgaaataacgaagaatgggaaaaggggggtttacctgaat |
31453214 |
T |
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| Q |
118 |
tccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaactagtccttttcctccttttcctgcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31453213 |
tccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaacgagtccttttcctccttttcctgcc |
31453114 |
T |
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| Q |
218 |
tttgctt |
224 |
Q |
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|||||| |
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| T |
31453113 |
attgctt |
31453107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 51448936 - 51448847
Alignment:
| Q |
116 |
attccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaactagtccttttcct |
205 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||| ||||||||||| || | ||||||| |||||||| |||||||||||| |
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| T |
51448936 |
attccagcacgagaagaacgagaaatgggttccttcttgtctctgtctttgttatccccgatggttttcgctgcaacaagtccttttcct |
51448847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 17200162 - 17200054
Alignment:
| Q |
116 |
attccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaactagtccttttcctccttttcctg |
215 |
Q |
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| T |
17200162 |
attccagcacgagaagaacgagaagtagatttcttcttgtctttgtctttgttagccgcaatggttttcgcgtcaacgagtccctttcctccttctcctg |
17200063 |
T |
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| Q |
216 |
cctttgctt |
224 |
Q |
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|| |||||| |
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| T |
17200062 |
ccattgctt |
17200054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 6357 - 6296
Alignment:
| Q |
127 |
agaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctg |
188 |
Q |
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| T |
6357 |
agaagaatgagaattaggtttcctcttatctttgtctttgttagccgcggtggttttcgctg |
6296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 9247532 - 9247593
Alignment:
| Q |
127 |
agaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctg |
188 |
Q |
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| T |
9247532 |
agaagaatgagaattaggtttcctcttatctttgtctttgttagccgcggtggttttcgctg |
9247593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 9279982 - 9280084
Alignment:
| Q |
116 |
attccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaactagtccttttcctccttttcctg |
215 |
Q |
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|||| ||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||| || || |||| |||||||||| |
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| T |
9279982 |
attctagcacgagagtaacgagaagtgtgtttcttcttgt------ctttgttagccgcggtggttttctctgcaacaagaccctttcatccttttccta |
9280075 |
T |
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| Q |
216 |
cctttgctt |
224 |
Q |
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| T |
9280076 |
ccattgctt |
9280084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 9290953 - 9291055
Alignment:
| Q |
116 |
attccagcacgagaagaacgagaagtgggtttcttcttgtctttgtctttgttagccgcagtggtttttgctgcaactagtccttttcctccttttcctg |
215 |
Q |
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|||| ||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||| || || |||| |||||||||| |
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| T |
9290953 |
attctagcacgagagtaacgagaagtgtgtttcttcttgt------ctttgttagccgcggtggttttctctgcaacaagaccctttcatccttttccta |
9291046 |
T |
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| Q |
216 |
cctttgctt |
224 |
Q |
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|| |||||| |
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| T |
9291047 |
ccattgctt |
9291055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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