View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12855_low_2 (Length: 823)
Name: NF12855_low_2
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12855_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 3e-93; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 96 - 284
Target Start/End: Complemental strand, 11688782 - 11688593
Alignment:
| Q |
96 |
aatttctgagctagccaccatttttctctttctcatttcctt-atgaaatgtgtagtgggttttgaaaaagctttctttttcacctattcaacttcaaaa |
194 |
Q |
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| T |
11688782 |
aatttctgagctagccaccatttttctctttctcatttcctttatcaaatgtgtagtgggttttgaaagagctttctttttcacctattcaacttcaaaa |
11688683 |
T |
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| Q |
195 |
gcaataccaccttagatttaaagatcagattcactttcattctataaggtacactctcaaacactttctctcactacaaagttgaaagtc |
284 |
Q |
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| T |
11688682 |
gcaataccaccttagatttaaagatcagattcactttcattctataaggtacactctcaaacactttctctcactacaaagttgaaagtc |
11688593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 343 - 514
Target Start/End: Complemental strand, 11688529 - 11688358
Alignment:
| Q |
343 |
agctgaaaattccaacattttggtatgtttctaaattaattttcttaggatggtattaattaaacaaagtagttggactcttgagtttttcaacaattaa |
442 |
Q |
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| T |
11688529 |
agctgaaaattccaacattttggtatgtttctaaattaattttcttaggatggtattaattaaacaaagtagttggactcttgagtttttcaacaattaa |
11688430 |
T |
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| Q |
443 |
aagaactattacttgcaatgactattcttgttttgttaatactataattcaaaaggttgaaaacattgatta |
514 |
Q |
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| T |
11688429 |
aagaactattacttgcaatgactattcttgttttgttaatactataattcaaaaggttgaaaacattgatta |
11688358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 713 - 805
Target Start/End: Complemental strand, 11688158 - 11688066
Alignment:
| Q |
713 |
gaagctattcaactatgaaggctttcaaatttcaatgtttgattgcggctgcttcatgaatcatgactgtgacttgttcttcataggtgtaat |
805 |
Q |
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| T |
11688158 |
gaagctattcaactatgaaggctttcaaatttcaatgtttgattgcggctgcttcatgaatcatgactgtgacttgttcttcataggtgtaat |
11688066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 550 - 621
Target Start/End: Complemental strand, 11688322 - 11688250
Alignment:
| Q |
550 |
actgtagctatttcacatctttatcagtcttatgttg-nnnnnnnngtctcaagttatgtttagattagatac |
621 |
Q |
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| T |
11688322 |
actgtagctatttcacatctttatcagtcttatgttgtttttttttgtctcaagttatgtttagattagatac |
11688250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11688877 - 11688844
Alignment:
| Q |
1 |
catcttaacaatgggggcctaagtgggacccatg |
34 |
Q |
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| T |
11688877 |
catcttaacaatgggggcctaagtaggacccatg |
11688844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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