View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12855_low_5 (Length: 419)
Name: NF12855_low_5
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12855_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 39883345 - 39883555
Alignment:
| Q |
13 |
aacatgctcatattttctcatcagtcatatacgggagataaactatggagttcggttaacaatcacgtcataatattataacaaaattgcaagcgcccaa |
112 |
Q |
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| T |
39883345 |
aacatgctcatattttctcatcagtcatatatgggagataaactatggagttcggttaacaatcacgtcatgatattgtaacaaaattgcaagcgcccaa |
39883444 |
T |
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| Q |
113 |
ggcatctagggaatcaataatgcacatcaa----ttaattaagtccatcctcctgggcgattcaaacttaatatagatggatcatattttacgagcaacg |
208 |
Q |
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| T |
39883445 |
ggcatctagggaatcaataatgcacatcaaaagcataattaagtccatcctcttgggcgattcaaacttaatatagatggatcatattttacgagtaacg |
39883544 |
T |
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| Q |
209 |
gaagctcgact |
219 |
Q |
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| T |
39883545 |
gaagctcgact |
39883555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 311 - 410
Target Start/End: Original strand, 39883558 - 39883655
Alignment:
| Q |
311 |
aaagtagcagtgaattcgattccaaagtatagtaaggaatatgattcaatgtggttataccaaatatttcttatttgcagcttgtacttgcaaacatcct |
410 |
Q |
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| T |
39883558 |
aaagtagcagtgaattcgattccaaagta--gtaaggaatatgattcaatgtggttataccaaatatttcttatttgcagcttgtacttgcaaacatcct |
39883655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 259
Target Start/End: Complemental strand, 38250609 - 38250502
Alignment:
| Q |
152 |
tccatcctcctgggcgattcaaacttaatatagatggatcatattttacgagcaacggaagctcgacttatggtgctttggttcataatcaatatggtaa |
251 |
Q |
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| T |
38250609 |
tccatcctcttggacgactcaaactcaatgtagatggatcatattttaccagcgtcggaagcttggcttgtggtggcttgattcgtgaccaacaaggtaa |
38250510 |
T |
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| Q |
252 |
atttgtgt |
259 |
Q |
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| T |
38250509 |
atttgtgt |
38250502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 42874750 - 42874843
Alignment:
| Q |
167 |
gattcaaacttaatatagatggatcatattttacgagcaacggaagctcgacttatggtgctttggttcataatcaatatggtaaatttgtgtc |
260 |
Q |
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| T |
42874750 |
gattcgaactcaatttagatggatcatattttacaagcaatgaaagctcggcttatggtagtttgattcgtgatcaatttggtaaatttgtgtc |
42874843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 42874636 - 42874702
Alignment:
| Q |
14 |
acatgctcatattttctcatcagtcatatacgggagataaactatggagttcggttaacaatcacgt |
80 |
Q |
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| T |
42874636 |
acatgctcatattttcttattggtcaaatatggaagataaactatggaattcagttaacaataacgt |
42874702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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