View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12855_low_6 (Length: 416)
Name: NF12855_low_6
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12855_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 43206078 - 43205681
Alignment:
| Q |
1 |
aaaagagaaaattttccataacatgaggccgtatgtaaagnnnnnnngttgaatgaaatatgtaattagtaaatcattatttttgtcttaaaaattgtaa |
100 |
Q |
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| T |
43206078 |
aaaagagcaaattttccataacatgaggcagtatgtaaagaaaaaa-gttgaatgaaatatgtaattagtaaatcattatttttgtcttaaaaattgtaa |
43205980 |
T |
|
| Q |
101 |
taatnnnnnnncttttgactgacactgttgtttaaaggcgattaatctcgatccgaaaacctctttaatgcataatgtgagttctctgctcacaattgaa |
200 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43205979 |
taataaaaaaacttttgactgacatcgttgtttaaaggcgattaatctccatcgaaaaacctctttaatgcataatgtgagttctccgctcacaattgaa |
43205880 |
T |
|
| Q |
201 |
taattttcatcgatcagtataatctgttggacacataaggccttcaatcaaattttcttccacaagagaaagggattgaacccggaccacttggttaaag |
300 |
Q |
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| T |
43205879 |
taattttcatc----agaataatctgttggacacataaggccttcaatcaaattttcttccacaagagaaagggattgaacccagaccacttggttaaag |
43205784 |
T |
|
| Q |
301 |
gatgcaaaattacgaacattttaccccacaccccaacaat--tatacccttacaaaccat---aaaaaatactaattttaacctttttaaaatcacatcc |
395 |
Q |
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| T |
43205783 |
gatgcaaaattacgaacattttaccccacaccccaacaattatatacccttacaaaccataaaaaaaaatactaattttaacctttttaaaatcacaccc |
43205684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 2092903 - 2092813
Alignment:
| Q |
314 |
gaacattttaccccacaccccaacaattatacccttac------aaaccataaaaaatactaattttaacctttttaaaatcacatccttc |
398 |
Q |
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| T |
2092903 |
gaacattttacctcacaccccgacaattatacccttacccctacaaaccatcaaaaatacctattttaaccttttcaaaatcacacccttc |
2092813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 44303319 - 44303267
Alignment:
| Q |
346 |
ccttacaaaccataaaaaatactaattttaacctttttaaaatcacatccttc |
398 |
Q |
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| T |
44303319 |
ccttacaaaccatcataaataccaattttaacctttctaaaatcgcacccttc |
44303267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 50941525 - 50941457
Alignment:
| Q |
320 |
tttaccccacaccccaacaattatacccttacaaaccataaaaaatactaattttaacctttttaaaat |
388 |
Q |
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| T |
50941525 |
tttactccacacctcaacaattatatccctacaaatcatcaaaaatatcaattttaaccttttttaaat |
50941457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 388
Target Start/End: Complemental strand, 41362612 - 41362573
Alignment:
| Q |
349 |
tacaaaccataaaaaatactaattttaacctttttaaaat |
388 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||| |
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| T |
41362612 |
tacaaaccatcaaaaatactaattttaaccattttaaaat |
41362573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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