View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12855_low_7 (Length: 356)

Name: NF12855_low_7
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12855_low_7
NF12855_low_7
[»] chr6 (14 HSPs)
chr6 (1-342)||(6505171-6505512)
chr6 (46-342)||(6516298-6516594)
chr6 (25-332)||(6457074-6457381)
chr6 (1-338)||(6465028-6465365)
chr6 (19-336)||(6473207-6473524)
chr6 (67-342)||(6527884-6528159)
chr6 (19-335)||(6526069-6526386)
chr6 (190-323)||(1828216-1828349)
chr6 (1-194)||(1831935-1832128)
chr6 (205-337)||(1839238-1839370)
chr6 (88-149)||(1827240-1827301)
chr6 (235-323)||(1827373-1827461)
chr6 (190-254)||(13054069-13054133)
chr6 (190-254)||(13062806-13062870)
[»] chr7 (6 HSPs)
chr7 (115-311)||(9665568-9665764)
chr7 (262-323)||(46383131-46383192)
chr7 (24-170)||(3753997-3754143)
chr7 (263-323)||(3754236-3754296)
chr7 (46-177)||(46383272-46383404)
chr7 (263-309)||(4045956-4046002)
[»] chr4 (1 HSPs)
chr4 (115-311)||(13536592-13536788)
[»] chr1 (2 HSPs)
chr1 (285-343)||(35244426-35244484)
chr1 (91-219)||(35244261-35244383)


Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 6505512 - 6505171
Alignment:
Q  1 caagggtctaatgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6505512 caagggtctaatgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaa 6505413  T
Q  101 agatcgatccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcaaactcaaattatacgcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6505412 agatcgatccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcgaactcaaattatacgcg 6505313  T
Q  201 tttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaat 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6505312 tttaaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaat 6505213  T
Q  301 gcatactatgctgcagcattgatgggaatggcatatggtgat 342  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  6505212 gcatactatgctgcagcattgatgggaatagcatatggtgat 6505171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 46 - 342
Target Start/End: Original strand, 6516298 - 6516594
Alignment:
Q  46 aatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctatt 145  Q
    ||||||||||| | ||| ||||||||||||||||| | ||| ||||||||||| ||||| |||||| ||||||||||||| ||||||   ||| ||||||    
T  6516298 aatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcctatt 6516397  T
Q  146 cacttgtggaagattttatgaacttaagcatagaatcaaactcaaattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagg 245  Q
    ||||| ||||||| ||||||||||||||  || |||| |||||||||||||||||||| |||| |||||||||||||| ||| ||||||||||||| |||    
T  6516398 cacttatggaagactttatgaacttaagtttaaaatcgaactcaaattatacgcgtttaaggtttttcgatctttacatgttacattcgtgggccgtagg 6516497  T
Q  246 gctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatgggaatggcatatggtgat 342  Q
    ||||||| | | |  | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  6516498 gctaaccaactctgaacatggaaggtatcaagagagtactagtgaagctgtgaatgcatactatgctgcagccttaatgggaatggcatatggtgat 6516594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 25 - 332
Target Start/End: Complemental strand, 6457381 - 6457074
Alignment:
Q  25 gatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtagga 124  Q
    ||||| || ||||| ||||| ||||||||||| | ||| |||||||| ||||| || | ||| |||||||||| |||||| |||||| | ||||| || |    
T  6457381 gattttgggttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttggggaagaa 6457282  T
Q  125 aatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcaaactcaaattatacgcgtttgaggtgtttcgatctttacaa 224  Q
    | |||||  ||||||| ||||||||  ||| ||||||  |||||||| | | | ||||||||||||||||||| ||||| ||||||||||||||||| ||    
T  6457281 agtataaacctcaagcttattcactcatggcagatttcctgaacttaggaagaaaatcaaactcaaattatacacgtttaaggtgtttcgatctttataa 6457182  T
Q  225 gttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatg 324  Q
     || ||||| ||||| ||||| |||| ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6457181 atttcattcttgggctggaggactaatcgaatttgcagatggaagaaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatg 6457082  T
Q  325 ggaatggc 332  Q
    ||||||||    
T  6457081 ggaatggc 6457074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 6465365 - 6465028
Alignment:
Q  1 caagggtctaatgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaa 100  Q
    |||||||||||||||  ||||| |||||| || |||||| |||| ||||||||||| | ||| |||||||| ||||| || | ||| || ||||||| ||    
T  6465365 caagggtctaatgatactggtgctgattttggattcggagtttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaa 6465266  T
Q  101 agatcgatccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcaaactcaaattatacgcg 200  Q
    |||| |||||||  ||||||||||| |||||| ||||||| ||||||||  |||  |||||||||||||| |||| | |  | ||||| ||||| || ||    
T  6465265 agattgatccaatttggggtaggaagtataagcctcaagcttattcactcatggctgattttatgaacttgagcagaaatccgaactcgaattacacccg 6465166  T
Q  201 tttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaat 300  Q
    | | ||||||||||||||||  || ||||||||||||||||||||| |||| |||||   ||||||||| ||||||||||||||||||||||||||||||    
T  6465165 tctaaggtgtttcgatctttttaaattgcattcgtgggccggagggttaactgagttcggagatggaagaaatcaagagagtactagtgaagctgtgaat 6465066  T
Q  301 gcatactatgctgcagcattgatgggaatggcatatgg 338  Q
    ||||||||| | ||||| ||||||||  ||||||||||    
T  6465065 gcatactattcagcagctttgatgggtttggcatatgg 6465028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 6473207 - 6473524
Alignment:
Q  19 ggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggg 118  Q
    |||| ||||||||| ||||||||||| ||||||||||| | ||| ||||| || ||||| || | ||| ||||||||||  ||||| ||||||   ||||    
T  6473207 ggtgctgatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggg 6473306  T
Q  119 gtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcaaactcaaattatacgcgtttgaggtgtttcgatct 218  Q
    ||| |||||||||| ||||||||||| ||||  ||||||||||||||| ||| |||| | | || || ||||||||||| | ||| |||||||| |||||    
T  6473307 gtaagaaatataagcctcaagcctatgcactcatggaagattttatgaccttgagcaaaaactcgaattcaaattatactcctttaaggtgttttgatct 6473406  T
Q  219 ttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagca 318  Q
    ||||||  ||||||| |||||||||||| ||||||||||| | |||||||| || |||||||||||||||||||| ||||||||||||||| |||||||     
T  6473407 ttacaaactgcattcttgggccggagggttaaccgagtttgcggatggaagaaaccaagagagtactagtgaagccgtgaatgcatactattctgcagcg 6473506  T
Q  319 ttgatgggaatggcatat 336  Q
    ||||| || |||||||||    
T  6473507 ttgatcggtatggcatat 6473524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 67 - 342
Target Start/End: Complemental strand, 6528159 - 6527884
Alignment:
Q  67 ggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatga 166  Q
    ||||||||| |||| ||||| || |||||||  ||||| |||||| | ||||||||||| |||||||||||||| |||||| |  |||||||||||||||    
T  6528159 ggatattttgtttatgcaattgctgtgcttgctaagattgatccagcttggggtaggaagtataaggctcaagcatattcattattggaagattttatga 6528060  T
Q  167 acttaagcatagaatcaaactcaaattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccgagttttcagatgg 266  Q
    | || ||||     |  |||||||||||| ||||||| |||||||| ||||||| ||||||||| || |||||||||||| ||||||||||| |||||||    
T  6528059 atttgagcacgagtttgaactcaaattatgcgcgttttaggtgttttgatcttttcaagttgcactcatgggccggaggggtaaccgagtttgcagatgg 6527960  T
Q  267 aaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatgggaatggcatatggtgat 342  Q
    ||| ||||||  |   | |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  6527959 aagtaatcaaatggcaagtagtgaagctgtaaatgcatactatgcttcagcattgatgggaatggcatatggtgat 6527884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 6526386 - 6526069
Alignment:
Q  19 ggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggg 118  Q
    |||| |||||| || |||||| |||| ||||||||||| | ||| |||||||| ||||| || | ||| ||||||||||  ||||| ||||| |  ||||    
T  6526386 ggtgctgattttgggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggg 6526287  T
Q  119 gtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcaaactcaaattat---acgcgtttgaggtgtttcga 215  Q
    |||| || |||||| |||||||||||||  |  |||  |||||||||||  | |||| | | |||||| | | ||||   |||| | | |||||||||||    
T  6526286 gtagaaagtataagtctcaagcctattctgtcatggctgattttatgaatctgagcagaaattcaaaccctagttattacacgcatctaaggtgtttcga 6526187  T
Q  216 tctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgca 315  Q
    ||| || || || || || ||||| ||||||||||| || ||  | |||||||| |||||||||||||| |||||||||| |||||| || ||||| |||    
T  6526186 tctgtataaattacactcttgggctggagggctaacagaattcactgatggaagaaatcaagagagtaccagtgaagctg-gaatgcttattatgc-gca 6526089  T
Q  316 gcattgatgggaatggcata 335  Q
    || |||||||||||||||||    
T  6526088 gccttgatgggaatggcata 6526069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 323
Target Start/End: Original strand, 1828216 - 1828349
Alignment:
Q  190 aattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtg 289  Q
    ||||| ||| || ||||||||||||||||||| || || || || ||||||||||||||||| || ||  | ||||| || ||||||||||| |||||||    
T  1828216 aattacacgtgtctgaggtgtttcgatctttataaattacactcttgggccggagggctaacagaattcgctgatggtagaaatcaagagagcactagtg 1828315  T
Q  290 aagctgtgaatgcatactatgctgcagcattgat 323  Q
    | || ||||||||||||||| | ||||| |||||    
T  1828316 atgcagtgaatgcatactattccgcagccttgat 1828349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 1831935 - 1832128
Alignment:
Q  1 caagggtctaatgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaa 100  Q
    |||||||||||| ||  ||||| ||||||||| || |||||| | || || ||||| | ||| |||||||| ||||| |  | ||| |||||||||| ||    
T  1831935 caagggtctaataatactggtgttgatttcgggtttggaattaataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgcaa 1832034  T
Q  101 agatcgatccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcaaactcaaatta 194  Q
    |||| |||||||  ||||||||  | |||||| ||||||||||||||||  | || |||||||||| ||| || | | | ||||||||||||||    
T  1832035 agattgatccaatttggggtagagagtataagcctcaagcctattcactcattgaggattttatgaccttgagtagaaattcaaactcaaatta 1832128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 337
Target Start/End: Original strand, 1839238 - 1839370
Alignment:
Q  205 aggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcat 304  Q
    |||||||| |||||||| || || || || ||||||||||||||||| |||||  | ||||| || |||||||| || ||||||||| | ||||||||||    
T  1839238 aggtgtttagatctttataaattacactcttgggccggagggctaacagagttcgctgatggtagaaatcaagatagcactagtgaatcagtgaatgcat 1839337  T
Q  305 actatgctgcagcattgatgggaatggcatatg 337  Q
    ||||| || |||| ||||| || |||| |||||    
T  1839338 actattcttcagctttgattggtatggaatatg 1839370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 1827240 - 1827301
Alignment:
Q  88 gcagtgcttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctattcact 149  Q
    |||||||||| |||||| ||| |||  |||||||| ||||||||| ||||||||||||||||    
T  1827240 gcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattcact 1827301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 1827373 - 1827461
Alignment:
Q  235 tgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgat 323  Q
    ||||| ||||||||||| || ||  | |||||||| |||||||||||  ||||||||||  |||||||||| ||| ||||||| |||||    
T  1827373 tgggctggagggctaactgaattcactgatggaagaaatcaagagagcgctagtgaagcaatgaatgcatattattctgcagccttgat 1827461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 13054069 - 13054133
Alignment:
Q  190 aattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccga 254  Q
    ||||| || ||||||||| ||||||||||||| || |||||||| ||| | |||||| |||||||    
T  13054069 aattaaacacgtttgaggggtttcgatctttataaattgcattcatggacgggagggttaaccga 13054133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 13062806 - 13062870
Alignment:
Q  190 aattatacgcgtttgaggtgtttcgatctttacaagttgcattcgtgggccggagggctaaccga 254  Q
    ||||| || ||||||||| ||||||||||||| || |||||||| ||||  |||||| |||||||    
T  13062806 aattaaacacgtttgaggggtttcgatctttataaattgcattcatgggtgggagggttaaccga 13062870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 115 - 311
Target Start/End: Original strand, 9665568 - 9665764
Alignment:
Q  115 tggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcaaactcaaattatacgcgtttgaggtgtttcg 214  Q
    |||||||| || |||||| ||||||||||||||||| ||||||||||  |||||||||||| |   |||||| | ||||| ||||||||| ||||||| |    
T  9665568 tggggtagaaagtataagcctcaagcctattcacttatggaagatttcgtgaacttaagcacatgttcaaaccctaattacacgcgtttgcggtgttttg 9665667  T
Q  215 atctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgc 311  Q
    ||||||||||| ||||||| ||||| |||||  |||  |||||| |||| |||||  ||||  |  | || ||||||||| | ||||||||||||||    
T  9665668 atctttacaagctgcattcatgggcaggaggattaaaagagtttccagaaggaagatatcagaaaggaacgagtgaagctattaatgcatactatgc 9665764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 46383192 - 46383131
Alignment:
Q  262 gatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgat 323  Q
    |||||||| |||||| |||||||||||||| || |||||||||||||| ||||||| |||||    
T  46383192 gatggaagaaatcaaaagagtactagtgaaactttgaatgcatactattctgcagctttgat 46383131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 3753997 - 3754143
Alignment:
Q  24 tgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtagg 123  Q
    |||||| ||||| |||||||| ||||||||||| | ||| ||||| ||||||||||| | ||| || || |||| |||||| ||||||   |||||        
T  3753997 tgattttggttttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatccattttggggacaa 3754096  T
Q  124 aaatataaggctcaagcctattcacttgtggaagattttatgaactt 170  Q
    || |||||  | ||||| ||||||||| || ||||||||||||||||    
T  3754097 aagtataaaccacaagcttattcacttttgcaagattttatgaactt 3754143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 3754236 - 3754296
Alignment:
Q  263 atggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgat 323  Q
    |||||||||||||||| ||| | |||||||| ||||||||||| ||| | |||||||||||    
T  3754236 atggaaggaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgat 3754296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 46383404 - 46383272
Alignment:
Q  46 aatgatcatcactttcacttaggatattttctttacgcaatagcagtgcttgtaaagatcgatccaacatggggtaggaaatataaggctc-aagcctat 144  Q
    ||||||||||| | ||| |||||||||| ||| || | |||  ||||||| |  ||||| ||||| |  ||||||||||| |||||| ||| |||| |||    
T  46383404 aatgatcatcattatcatttaggatattctctctatggaattacagtgctcgccaagattgatcctatttggggtaggaagtataagtctcaaagcttat 46383305  T
Q  145 tcacttgtggaagattttatgaacttaagcata 177  Q
    |||||  |||||||| |||||||||| ||||||    
T  46383304 tcactcatggaagatattatgaacttgagcata 46383272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 4046002 - 4045956
Alignment:
Q  263 atggaaggaatcaagagagtactagtgaagctgtgaatgcatactat 309  Q
    ||||||| |||||||| ||| ||||||||||||||||||| ||||||    
T  4046002 atggaagaaatcaagaaagttctagtgaagctgtgaatgcgtactat 4045956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 115 - 311
Target Start/End: Original strand, 13536592 - 13536788
Alignment:
Q  115 tggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcaaactcaaattatacgcgtttgaggtgtttcg 214  Q
    |||||||| || |||||| ||||||||||||||||| ||||||||||  |||||||||||| |   |||||| | ||||| ||||||||| ||||||| |    
T  13536592 tggggtagaaagtataagcctcaagcctattcacttatggaagatttcgtgaacttaagcacatgttcaaaccctaattacacgcgtttgcggtgttttg 13536691  T
Q  215 atctttacaagttgcattcgtgggccggagggctaaccgagttttcagatggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgc 311  Q
    ||||||||||| ||||||| ||||| |||||  |||  |||||| |||| |||||  ||||  |  | || ||||||||| | ||||||||||||||    
T  13536692 atctttacaagctgcattcatgggcaggaggattaaaagagtttccagaaggaagatatcagaaaggaacgagtgaagctattaatgcatactatgc 13536788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 35244426 - 35244484
Alignment:
Q  285 tagtgaagctgtgaatgcatactatgctgcagcattgatgggaatggcatatggtgatg 343  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  35244426 tagtgaagctgtgaatgcatactatgccgcatcattgatgggaatggcttatggtgatg 35244484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 35244261 - 35244383
Alignment:
Q  91 gtgcttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcaaactcaa 190  Q
    |||||||| ||||| |||||||| ||||||||||| |||||  ||||||||||||||||  || |||||||||||||||| || ||      ||| || |    
T  35244261 gtgcttgttaagattgatccaacttggggtaggaagtataaatctcaagcctattcactcatgaaagattttatgaacttgagtat------aaaatcga 35244354  T
Q  191 attatacgcgtttgaggtgtttcgatctt 219  Q
    ||||||| ||||||||||||||| |||||    
T  35244355 attatacacgtttgaggtgtttcaatctt 35244383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University