View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12855_low_8 (Length: 349)

Name: NF12855_low_8
Description: NF12855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12855_low_8
NF12855_low_8
[»] chr8 (3 HSPs)
chr8 (214-332)||(39047208-39047333)
chr8 (102-149)||(39047096-39047143)
chr8 (228-285)||(9512438-9512495)
[»] chr5 (4 HSPs)
chr5 (286-332)||(29195265-29195311)
chr5 (289-332)||(12143876-12143919)
chr5 (286-332)||(40018111-40018157)
chr5 (295-332)||(20882967-20883004)
[»] chr1 (3 HSPs)
chr1 (286-332)||(16313968-16314014)
chr1 (289-332)||(1181497-1181540)
chr1 (286-332)||(7014985-7015031)
[»] chr7 (3 HSPs)
chr7 (225-285)||(47441624-47441684)
chr7 (286-332)||(44226520-44226566)
chr7 (288-332)||(432933-432977)
[»] scaffold0001 (1 HSPs)
scaffold0001 (286-332)||(185442-185488)
[»] chr4 (10 HSPs)
chr4 (227-285)||(43138908-43138966)
chr4 (230-281)||(16935543-16935594)
chr4 (289-332)||(22923321-22923364)
chr4 (289-332)||(22927974-22928017)
chr4 (289-332)||(22984253-22984296)
chr4 (289-332)||(22997841-22997884)
chr4 (286-332)||(21283800-21283846)
chr4 (286-332)||(45864951-45864997)
chr4 (286-332)||(54185607-54185653)
chr4 (287-332)||(12657194-12657239)
[»] chr3 (2 HSPs)
chr3 (285-332)||(20513515-20513562)
chr3 (286-332)||(30842114-30842160)
[»] chr6 (1 HSPs)
chr6 (295-332)||(1031791-1031828)
[»] chr2 (1 HSPs)
chr2 (295-332)||(187267-187304)
[»] scaffold0010 (1 HSPs)
scaffold0010 (288-332)||(28605-28649)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 332
Target Start/End: Original strand, 39047208 - 39047333
Alignment:
Q  214 gttttattcgagcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta-------cagcgttaattaactaacgca 306  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||       |||||||| ||||||||||||    
T  39047208 gttttattccagcgtgagttaacccacacggcattcgttaagtaacacagagtttaacacttgcgttatttaacctgcgcagcgttagttaactaacgca 39047307  T
Q  307 tagtttttcaattgcgttagttaact 332  Q
    |||||||||| |||||||||||||||    
T  39047308 tagtttttcacttgcgttagttaact 39047333  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 39047096 - 39047143
Alignment:
Q  102 caaaggttcctagagcatgaatttagaataacagttcatactcttttt 149  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  39047096 caaaggttcctaaagcatgaatttagaataacagttcatactcttttt 39047143  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 9512438 - 9512495
Alignment:
Q  228 tgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 285  Q
    ||||||||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||    
T  9512438 tgagttaactcacgcagcgttagttaaataacacagagtttaacacttgcgttactta 9512495  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 29195311 - 29195265
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||    
T  29195311 cagcgttagttaactaacgcatagtttttcacttgcgttagttaact 29195265  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 12143919 - 12143876
Alignment:
Q  289 cgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||    
T  12143919 cgttagttaactaacacatagtttttcacttgcgttagttaact 12143876  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 40018157 - 40018111
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||| ||| ||||||||||||||||||| || |||||||||||||||    
T  40018157 cagcattagttaactaacgcatagttttacacttgcgttagttaact 40018111  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 20883004 - 20882967
Alignment:
Q  295 ttaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  20883004 ttaactaacacatagtttttcacttgcgttagttaact 20882967  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 16314014 - 16313968
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||    
T  16314014 cagcgttagttaactaacgcatagtttttcacttgcgttagttaact 16313968  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 1181497 - 1181540
Alignment:
Q  289 cgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||| |||||||||||||||||||||| |||||||||||||||    
T  1181497 cgttagttaactaacgcatagtttttcacttgcgttagttaact 1181540  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 7014985 - 7015031
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||    
T  7014985 cagcgttagttaactaacgcgtagtttttcacttgcgttagttaact 7015031  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 47441684 - 47441624
Alignment:
Q  225 gcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 285  Q
    |||||||||||| ||||| || || |||||||||  |||||||||||||||||||||||||    
T  47441684 gcgtgagttaactcacgcagctttagttaagtaacgcagagtttaacacttgcgttactta 47441624  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 44226520 - 44226566
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||||| ||||||||| |||||||||||| ||||||| |||||||    
T  44226520 cagcgttagttaactaacacatagtttttcacttgcgttggttaact 44226566  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 432933 - 432977
Alignment:
Q  288 gcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||| |||||||||||||| |||| || |||||||||||||||    
T  432933 gcgttagttaactaacgcataattttacacttgcgttagttaact 432977  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 185488 - 185442
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||||| ||||||||||||||||||| || |||||||||||||||    
T  185488 cagcgttagttaactaacgcatagttttacacttgcgttagttaact 185442  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 43138966 - 43138908
Alignment:
Q  227 gtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 285  Q
    |||||||||| ||||| ||||| ||||||||| || ||||||||||||||||| |||||    
T  43138966 gtgagttaacacacgcagcgttagttaagtaacacggagtttaacacttgcgtcactta 43138908  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 16935594 - 16935543
Alignment:
Q  230 agttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgtta 281  Q
    ||||||| ||||| ||||| ||||||||  ||||||||||||||||||||||    
T  16935594 agttaactcacgcagcgttagttaagtagcacagagtttaacacttgcgtta 16935543  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 22923321 - 22923364
Alignment:
Q  289 cgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||    
T  22923321 cgttagttaactaacacatagtttttcacttgcgttagttaact 22923364  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 22927974 - 22928017
Alignment:
Q  289 cgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||    
T  22927974 cgttagttaactaacacatagtttttcacttgcgttagttaact 22928017  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 22984253 - 22984296
Alignment:
Q  289 cgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||    
T  22984253 cgttagttaactaacacatagtttttcacttgcgttagttaact 22984296  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 22997841 - 22997884
Alignment:
Q  289 cgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||    
T  22997841 cgttagttaactaacacatagtttttcacttgcgttagttaact 22997884  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 21283846 - 21283800
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||||| ||||||||| ||||||||| || |||||||||||||||    
T  21283846 cagcgttagttaactaacacatagttttacacttgcgttagttaact 21283800  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 45864951 - 45864997
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||||| ||||||||||||||||||| || |||| ||||||||||    
T  45864951 cagcgttacttaactaacgcatagttttacacttgcattagttaact 45864997  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 54185607 - 54185653
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||||| ||||||| ||||||||||| || |||||||||||||||    
T  54185607 cagcgttacttaactagcgcatagttttacacttgcgttagttaact 54185653  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 12657194 - 12657239
Alignment:
Q  287 agcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||||| ||||||||| |||||||||||| ||| |||||||||||    
T  12657194 agcgttagttaactaacacatagtttttcacttgtgttagttaact 12657239  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 20513562 - 20513515
Alignment:
Q  285 acagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||||||| ||||||| ||||||||||| || |||||||||||||||    
T  20513562 acagcgttagttaactatcgcatagttttacacttgcgttagttaact 20513515  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 30842114 - 30842160
Alignment:
Q  286 cagcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||||| ||||||||||||||| ||| ||||| ||||||||||||    
T  30842114 cagcgttagttaactaacgcataggtttacaattacgttagttaact 30842160  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 1031791 - 1031828
Alignment:
Q  295 ttaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  1031791 ttaactaacacatagtttttcacttgcgttagttaact 1031828  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 187267 - 187304
Alignment:
Q  295 ttaactaacgcatagtttttcaattgcgttagttaact 332  Q
    ||||||||||||||||||| || |||||||||||||||    
T  187267 ttaactaacgcatagttttacacttgcgttagttaact 187304  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 28649 - 28605
Alignment:
Q  288 gcgttaattaactaacgcatagtttttcaattgcgttagttaact 332  Q
    |||||| |||||||||||||| |||| || |||||||||||||||    
T  28649 gcgttagttaactaacgcataattttacacttgcgttagttaact 28605  T

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